Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004317.1 Hibiscus syriacus cultivar Beakdansim tig00009468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93855

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--508
9
4.9
9
84
15
65
80
0
0
20
0.72
464--509
5
9.8
5
90
9
71
80
0
0
19
0.71
465--509
23
2.0
23
100
0
90
80
0
0
20
0.72
6000--6057
30
1.9
31
82
10
75
67
0
8
24
1.18
6685--6875
76
2.5
76
95
0
348
59
13
2
25
1.45
6729--6859
44
3.2
44
66
28
126
57
14
1
26
1.47
14589--14638
17
2.9
17
88
5
66
78
0
22
0
0.76
14589--14636
12
4.1
12
78
13
55
77
0
22
0
0.78
27711--27757
19
2.5
19
82
0
58
55
4
2
38
1.31
28271--28329
21
2.7
23
82
12
63
47
1
0
50
1.11
42633--42842
65
3.3
63
81
11
221
30
23
19
26
1.98
42814--42862
19
2.6
19
84
9
57
24
28
20
26
1.99
42683--42862
65
2.8
63
82
10
204
29
23
19
27
1.98
44544--44597
22
2.5
22
96
0
99
33
24
22
20
1.97
47789--47891
3
34.3
3
100
0
206
33
0
0
66
0.92
48634--48667
2
17.0
2
100
0
68
50
0
0
50
1.00
48665--48762
17
5.1
18
72
25
76
55
1
5
38
1.29
48657--48780
62
2.0
62
96
3
232
52
1
4
41
1.32
50061--50087
12
2.2
12
100
0
54
62
7
0
29
1.22
61601--61635
2
17.5
2
100
0
70
48
0
0
51
1.00
61622--61753
66
2.0
66
96
0
246
51
1
4
42
1.31
61632--61735
18
5.1
18
72
25
73
53
0
4
40
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63036--63062
12
2.2
12
100
0
54
62
7
0
29
1.22
70027--70109
46
1.9
41
86
13
114
24
12
16
46
1.81
73887--73938
27
1.9
27
84
7
70
73
7
5
13
1.24
78583--78690
30
3.6
30
77
8
103
44
5
17
32
1.72
78622--78702
29
2.7
30
82
5
101
46
6
14
32
1.69
80767--80794
5
5.6
5
100
0
56
17
0
0
82
0.68
85288--85343
22
2.5
22
85
5
76
21
25
16
37
1.93
86040--86099
24
2.5
24
86
0
75
35
23
20
21
1.96
90858--90906
20
2.5
20
86
0
62
38
16
24
20
1.92
91389--91423
17
2.2
17
90
10
56
40
5
25
28
1.78
91492--91540
2
24.5
2
100
0
98
48
0
0
51
1.00
91576--91666
23
4.0
23
88
0
128
23
21
25
29
1.99

Tables:   1

The End!