Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004318.1 Hibiscus syriacus cultivar Beakdansim tig00009469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51451

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1465--1523
30
2.0
30
86
0
82
28
22
8
40
1.83
4346--4417
30
2.4
30
85
0
99
33
15
25
26
1.95
4429--4588
29
5.6
29
78
6
155
40
20
22
16
1.91
4429--4588
58
2.8
58
85
2
207
40
20
22
16
1.91
5273--5307
12
2.8
13
82
8
54
22
14
37
25
1.92
6616--6678
30
2.1
31
81
3
74
41
9
20
28
1.84
8435--8464
15
1.9
16
93
6
53
76
0
6
16
0.99
10053--10088
16
2.2
16
90
9
56
0
11
0
88
0.50
12197--12411
55
3.9
55
96
0
403
36
10
18
35
1.84
12732--12785
13
4.0
13
77
15
56
40
3
1
53
1.29
12752--12806
13
4.2
13
81
4
56
50
5
0
43
1.25
12827--12926
42
2.6
38
79
14
114
50
1
3
46
1.23
12842--12922
42
1.9
42
87
0
117
49
1
3
45
1.27
14392--14929
8
68.6
8
73
7
280
2
58
1
37
1.20
14408--14835
20
23.2
18
71
13
134
2
58
1
38
1.17
14394--14929
12
45.6
12
73
14
370
2
58
1
37
1.20
14392--14929
18
30.6
18
74
11
366
2
58
1
37
1.20
14390--14912
14
37.3
14
73
16
191
2
58
1
37
1.19
17491--17614
64
2.0
63
85
7
171
43
4
6
45
1.51
17603--17689
33
2.5
33
78
12
95
44
5
4
44
1.48
18654--18813
57
2.8
57
80
3
180
38
5
11
45
1.64
22536--22639
21
4.7
23
81
8
110
20
25
30
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22536--22639
44
2.4
43
88
1
163
20
25
30
23
1.98
26394--26433
21
1.9
21
85
10
55
35
10
2
52
1.48
30001--30068
19
3.6
19
80
4
84
19
23
19
38
1.93
31388--31436
24
2.0
24
84
8
62
40
4
10
44
1.57
47223--47388
7
23.3
7
69
15
83
41
3
6
48
1.45
47348--47388
2
21.0
2
95
5
75
48
0
0
51
1.00
47347--47437
23
3.9
23
76
11
69
40
7
1
50
1.38
48678--48705
14
2.0
14
100
0
56
21
0
0
78
0.75
48851--48885
12
2.8
12
91
4
52
45
17
2
34
1.63
49287--49320
17
2.1
17
88
5
52
29
23
0
47
1.52
50019--50118
42
2.6
38
79
14
114
50
1
3
46
1.23
50034--50163
42
3.2
42
75
11
119
51
0
3
44
1.22
50162--50215
25
2.3
24
84
9
67
44
1
1
51
1.22
50315--50385
27
2.4
28
81
13
81
52
0
2
45
1.15

Tables:   1

The End!