genome.fa.s432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000432.1 Hibiscus syriacus cultivar Beakdansim tig00000793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120878

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338--391	21	2.6	21	80	13	67	12	24	22	40	1.89
6277--6313	20	2.0	19	85	15	51	59	5	5	29	1.42
8767--9958	256	4.7	257	85	3	1447	33	17	16	32	1.92
9851--9957	42	2.6	42	80	1	126	29	20	19	29	1.97
12955--13035	25	3.3	25	82	5	94	54	12	3	29	1.55
13008--13045	19	2.0	19	89	0	58	55	13	0	31	1.38
18246--18325	25	3.2	25	64	28	60	55	12	12	20	1.69
18253--18363	51	2.2	51	96	0	204	54	12	13	19	1.71
18252--18336	26	3.3	26	72	21	97	55	12	12	18	1.69
18277--18365	25	3.5	25	71	17	76	52	11	14	21	1.72
20208--20515	125	2.5	124	84	6	408	27	16	23	32	1.96
20444--20873	126	3.4	126	85	1	567	25	18	23	31	1.98
23407--23451	2	22.5	2	100	0	90	48	0	0	51	1.00
26019--26145	63	2.0	63	90	0	200	38	17	21	22	1.93
28065--28175	51	2.2	51	90	3	170	55	9	12	21	1.65
28103--28175	26	2.8	26	68	24	64	54	9	13	21	1.67
28064--28149	26	3.3	26	70	23	74	56	10	11	20	1.64
28089--28174	25	3.4	26	69	16	72	55	9	13	20	1.66
30188--30240	3	19.0	3	78	21	53	28	0	1	69	0.99
30188--30240	13	4.2	13	73	21	51	28	0	1	69	0.99
31990--32037	2	25.0	2	91	8	82	50	0	0	50	1.00
34642--34681	21	1.9	21	94	0	71	22	15	10	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36957--36982	2	13.0	2	100	0	52	50	0	0	50	1.00
37282--37347	12	5.1	13	74	17	57	81	3	15	0	0.80
37294--37353	6	9.7	6	76	20	52	83	3	13	0	0.77
37293--37353	13	5.0	11	74	18	50	83	3	13	0	0.76
37278--37353	19	4.1	18	80	9	89	80	2	17	0	0.83
39503--39727	64	3.5	65	82	3	188	33	20	18	27	1.96
39547--39727	65	2.8	64	84	4	238	33	20	19	25	1.97
40036--40070	12	2.9	12	100	0	70	34	0	25	40	1.56
40086--40159	29	2.6	29	97	2	141	43	16	21	18	1.88
43201--43424	64	3.5	64	79	4	204	33	19	18	28	1.95
43733--43767	12	2.9	12	100	0	70	34	0	25	40	1.56
43783--43856	29	2.6	29	97	2	141	43	16	21	18	1.88
43941--43973	15	2.2	15	94	0	57	15	21	33	30	1.94
46908--47131	64	3.5	64	79	4	204	33	19	18	28	1.95
47440--47474	12	2.9	12	100	0	70	34	0	25	40	1.56
47490--47563	29	2.6	29	97	2	141	43	16	21	18	1.88
47648--47680	15	2.2	15	94	0	57	15	21	33	30	1.94
51774--51850	22	3.5	22	96	0	145	33	11	14	40	1.82
52642--53306	113	5.9	113	86	3	878	37	14	19	28	1.91
53616--53661	18	2.6	17	80	10	56	26	0	2	71	0.97
55264--55471	115	1.8	115	87	0	308	38	9	7	44	1.65
57727--57778	24	2.2	24	100	0	104	30	3	44	21	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60585--60654	14	5.2	13	77	5	59	74	0	10	15	1.07
60588--60646	9	5.8	10	72	18	50	74	0	10	15	1.06
60588--60646	5	11.6	5	72	16	50	74	0	10	15	1.06
61190--61226	2	18.5	2	100	0	74	51	0	0	48	1.00
61212--61307	52	1.9	52	81	8	119	59	2	4	34	1.28
62610--63141	106	5.0	106	93	0	857	21	19	24	34	1.96
63628--63712	37	2.3	37	81	4	91	42	15	17	24	1.88
64383--64418	18	2.0	18	88	0	54	41	30	8	19	1.81
65481--65538	16	3.7	15	78	15	64	1	13	6	77	1.05
65481--65532	16	3.3	16	86	5	70	0	13	7	78	0.94
68996--69027	10	3.2	10	95	0	55	75	0	6	18	1.01
70313--70373	24	2.7	23	75	19	74	68	0	3	27	1.05
70545--70659	14	8.9	12	69	16	54	62	1	2	33	1.19
70584--70608	2	12.5	2	100	0	50	52	0	0	48	1.00
71702--73153	485	3.0	486	94	1	2612	22	28	25	24	2.00
81183--81285	32	3.2	32	76	10	93	40	27	14	17	1.88
82504--82544	18	2.3	18	91	4	66	29	4	2	63	1.28
84823--84907	35	2.5	33	76	14	82	27	7	10	55	1.60
90933--91007	38	2.0	38	97	0	141	45	18	9	26	1.80
91123--91174	25	2.1	25	100	0	104	40	28	19	11	1.86
92326--92630	6	50.8	6	100	0	610	33	16	0	50	1.46
96193--96276	34	2.6	32	80	15	93	27	41	17	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96296--96321	5	5.2	5	100	0	52	23	57	19	0	1.40
96476--96566	42	2.1	43	86	6	123	34	37	15	13	1.86
97404--97644	45	5.4	44	84	6	263	29	21	9	39	1.84
97426--97644	90	2.4	90	87	3	316	29	21	9	39	1.85
97437--97681	45	5.4	45	84	5	135	31	22	8	37	1.85
97426--97681	90	2.8	90	81	5	304	29	22	9	38	1.85
97426--97681	135	1.9	135	83	6	331	29	22	9	38	1.85
98132--98190	21	2.7	21	78	14	66	25	27	15	32	1.95
101338--101371	17	2.0	17	88	0	50	73	2	0	23	0.97
107064--107131	35	1.9	35	82	5	84	23	19	17	39	1.92
108296--108331	18	2.0	18	88	0	54	27	16	0	55	1.42
113742--113807	5	13.0	5	87	9	98	77	1	1	19	0.93
113742--113807	21	3.2	20	89	8	98	77	1	1	19	0.93
115901--115958	20	2.6	22	86	10	75	31	18	22	27	1.97
116265--116317	23	2.2	24	83	3	63	33	3	16	45	1.66
120673--120713	13	3.2	13	80	13	50	34	0	19	46	1.50

Tables:   1

The End!