genome.fa.s4320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004320.1 Hibiscus syriacus cultivar Beakdansim tig00009471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75823

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255--307	23	2.3	23	90	0	79	28	26	24	20	1.99
263--314	23	2.3	23	93	3	88	28	26	23	21	1.99
1586--1629	19	2.3	19	88	0	61	38	11	4	45	1.61
2050--2094	21	2.1	21	87	0	63	15	24	28	31	1.96
3039--3076	15	2.6	15	87	4	51	18	7	0	73	1.06
3054--3114	21	3.0	21	69	11	54	22	3	0	73	0.97
3176--3216	2	20.5	2	100	0	82	48	0	0	51	1.00
3598--3648	22	2.4	21	81	15	68	17	9	1	70	1.24
3598--3673	26	3.0	25	85	9	93	17	9	1	72	1.17
3621--3678	25	2.3	26	88	8	93	18	6	0	74	1.04
10939--11032	21	4.5	20	74	12	64	36	24	13	25	1.93
11002--11062	21	2.9	21	80	0	68	37	22	16	22	1.93
17342--17385	21	2.0	22	82	4	54	18	9	13	59	1.60
23884--23940	29	1.9	30	92	3	98	52	7	14	26	1.66
26595--26691	15	7.0	14	77	12	85	47	0	2	50	1.12
26636--26789	63	2.3	67	84	9	210	40	0	5	53	1.25
26686--26781	22	4.3	22	67	13	70	38	0	9	52	1.34
26699--26734	14	2.5	14	95	4	63	38	0	0	61	0.96
26714--26919	32	7.4	31	68	29	169	35	0	10	52	1.40
26714--26936	54	4.1	54	97	0	410	35	0	11	52	1.41
26791--26833	22	2.0	22	100	0	86	34	0	13	51	1.42
26890--26962	22	3.3	22	69	16	53	28	0	16	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26813--27172	134	2.7	134	91	1	578	35	1	12	50	1.48
26946--27053	32	3.7	32	72	23	119	37	1	10	50	1.47
26714--27016	80	3.8	80	74	12	248	34	0	11	52	1.42
26947--27070	54	2.3	54	90	0	212	36	1	10	51	1.46
30429--30461	14	2.4	14	90	5	50	24	0	27	48	1.51
30610--30691	31	2.7	32	76	14	91	34	0	9	56	1.32
31152--31188	20	1.9	19	89	10	58	45	10	24	18	1.81
55679--55714	18	2.0	18	94	0	63	13	55	19	11	1.68
55843--55920	31	2.5	31	93	4	129	60	0	0	39	0.97
55969--56029	25	2.4	25	94	0	104	29	44	13	13	1.81
68362--68413	27	1.9	27	84	7	70	44	21	9	25	1.82
69900--69928	14	2.1	14	100	0	58	20	17	20	41	1.90

Tables:   1

The End!