Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004321.1 Hibiscus syriacus cultivar Beakdansim tig00009472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106644

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
469--793
45
7.2
45
87
1
463
40
13
21
24
1.89
7423--7620
95
2.1
95
89
1
299
39
10
20
28
1.86
8032--8356
45
7.2
45
90
0
481
42
13
20
24
1.88
10621--10837
47
4.8
45
85
8
269
30
20
6
41
1.79
10621--10837
91
2.4
91
85
5
287
30
20
6
41
1.79
15332--15364
2
16.5
2
100
0
66
48
0
0
51
1.00
17492--17558
23
2.9
23
84
4
82
31
23
17
26
1.97
21745--21814
19
3.6
19
83
7
79
25
27
11
35
1.90
24025--24141
36
3.2
36
68
10
94
32
17
13
36
1.89
24910--25352
122
3.6
122
79
4
500
36
24
12
26
1.91
24913--25360
244
1.8
245
84
4
618
37
24
12
25
1.90
26847--26937
32
2.8
32
84
1
119
30
16
4
48
1.66
36592--37042
55
8.2
55
91
0
688
23
19
19
37
1.94
41974--42015
18
2.3
19
84
15
54
42
0
11
45
1.41
41979--42020
19
2.2
19
83
12
50
35
0
11
52
1.38
42124--42208
44
1.9
44
85
0
116
34
21
14
30
1.93
46847--47730
3
305.7
3
86
9
1297
65
0
33
0
0.98
56487--56557
22
3.3
22
69
15
76
33
12
25
28
1.92
56510--56581
20
3.5
20
66
14
56
34
11
27
26
1.90
56469--56584
42
2.8
42
93
1
189
35
12
25
26
1.91
57079--57490
45
9.1
45
87
1
515
40
11
21
26
1.88
57426--57614
26
7.9
25
68
20
120
44
11
22
21
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57426--57600
93
1.9
92
90
1
278
44
10
23
21
1.84
57333--57602
46
5.9
46
84
3
246
41
11
23
23
1.87
57563--57621
26
2.3
26
84
0
82
49
8
22
20
1.75
62719--63097
90
4.2
90
85
7
441
41
12
22
23
1.88
62719--62986
45
6.0
45
95
0
464
39
12
22
25
1.89
62749--63185
45
9.6
46
86
3
287
42
12
22
22
1.87
63523--63677
81
1.9
82
81
1
186
38
9
25
27
1.87
64544--64649
40
2.7
40
80
2
124
27
19
23
29
1.98
70235--70277
12
3.5
13
78
15
56
44
0
0
55
0.99
70235--70284
24
2.1
24
85
7
66
42
2
0
56
1.11
71187--71289
30
3.3
30
67
18
84
22
22
16
38
1.92
82061--82176
61
1.9
61
85
7
164
56
11
18
12
1.65
82924--83768
105
8.0
105
95
0
1483
33
25
18
22
1.96
83826--83867
20
2.1
20
86
0
57
23
19
19
38
1.93
83905--84161
106
2.4
106
94
0
444
33
26
19
21
1.97
83092--84298
393
3.0
393
88
6
1628
31
25
18
23
1.97
84219--84260
20
2.1
20
86
0
57
23
19
19
38
1.93
84478--84517
22
1.9
20
90
10
62
45
2
0
52
1.14
85425--85527
30
3.3
30
67
18
84
22
22
16
38
1.92
87064--87195
40
3.3
40
85
3
178
23
21
27
27
1.99
89388--89438
22
2.3
22
100
0
102
15
19
17
47
1.83
91077--91265
95
2.0
93
94
2
333
44
5
13
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92308--92380
31
2.4
30
82
8
87
36
2
1
58
1.21
92376--92438
30
2.1
31
93
3
110
26
11
3
58
1.47
93541--93577
15
2.5
15
100
0
74
48
0
10
40
1.38
93541--93577
7
4.9
8
87
12
60
48
0
10
40
1.38
93476--93648
92
1.9
92
89
4
231
49
6
10
32
1.64
94644--94765
63
2.0
63
85
8
169
44
6
6
42
1.56

Tables:   1

The End!