genome.fa.s4322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004322.1 Hibiscus syriacus cultivar Beakdansim tig00009473_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85451

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544--1580	18	2.0	19	94	5	67	64	0	10	24	1.25
5461--5772	55	5.7	55	91	1	484	37	11	17	33	1.86
5461--5772	108	2.9	110	91	1	484	37	11	17	33	1.86
5470--5772	163	1.9	163	92	0	507	37	10	17	34	1.84
5471--5820	108	3.2	107	85	4	445	37	11	17	33	1.85
5471--5820	163	2.1	163	87	3	490	37	11	17	33	1.85
5880--6531	81	8.1	81	89	2	909	35	11	22	30	1.90
11263--11463	55	3.7	55	94	0	350	37	10	17	34	1.84
11263--11463	109	1.8	110	94	1	359	37	10	17	34	1.84
11263--11511	109	2.3	109	85	3	315	36	11	17	33	1.86
11567--11976	81	5.1	81	86	2	520	34	11	22	30	1.90
21001--21054	21	2.6	21	96	0	99	22	25	0	51	1.48
23569--23621	23	2.3	23	93	0	88	24	20	20	33	1.97
26008--26066	3	20.0	3	86	10	86	33	0	1	64	1.04
26008--26066	20	2.8	20	89	5	91	33	0	1	64	1.04
26656--26718	28	2.3	28	97	2	119	9	20	28	41	1.84
26683--27112	90	4.8	90	90	2	641	24	20	21	33	1.97
26690--27112	181	2.4	181	91	2	685	25	20	21	33	1.97
27125--27479	136	2.6	136	90	2	554	31	18	22	27	1.97
31547--31604	3	19.7	3	86	10	84	34	0	1	63	1.04
31547--31604	20	2.8	20	89	5	89	34	0	1	63	1.04
35279--35337	3	20.0	3	86	10	86	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35279--35337	20	2.8	20	89	5	91	33	0	0	66	0.92
35915--36355	90	4.9	90	90	1	672	25	19	21	32	1.97
35914--36355	181	2.5	181	92	2	714	25	19	21	33	1.97
36368--36722	136	2.6	136	90	2	563	31	18	22	27	1.97
37068--37105	3	12.7	3	89	10	60	36	0	0	63	0.95
40651--40714	3	22.0	3	84	12	89	34	0	1	64	1.03
40649--40714	25	2.6	25	90	4	107	34	0	1	63	1.04
41292--41732	90	4.9	90	90	1	672	25	19	21	32	1.97
41291--41732	181	2.5	181	92	2	714	25	19	21	33	1.97
41745--42099	136	2.6	136	90	2	563	31	18	22	27	1.97
42445--42488	3	14.7	3	90	9	72	36	0	0	63	0.95
45446--45498	27	1.9	28	92	3	90	16	11	11	60	1.59
46752--46838	12	6.8	12	77	14	75	19	20	12	47	1.82
46764--46847	27	3.1	27	85	0	123	17	19	13	50	1.78
49285--49332	12	4.0	12	81	10	62	79	2	10	8	1.02
51179--51278	32	3.1	32	88	2	137	32	13	22	33	1.92
51255--51308	22	2.5	22	96	0	99	33	12	18	35	1.89
51398--51489	34	2.7	34	79	0	112	39	17	9	33	1.83
51867--52370	36	13.7	38	82	8	299	25	21	15	37	1.93
51867--52048	39	4.6	40	80	8	158	30	17	14	37	1.90
52025--52378	36	10.0	36	86	4	425	24	23	15	37	1.93
52144--52193	15	3.3	15	85	0	73	20	26	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52258--52322	21	3.4	21	68	24	70	24	26	12	36	1.91
52312--52414	51	2.0	53	84	9	140	27	21	16	34	1.95
52439--52835	43	8.9	43	80	11	381	27	13	27	30	1.94
52642--52756	55	2.1	55	91	3	187	26	13	27	31	1.94
52599--52788	98	1.9	98	90	4	303	25	13	28	32	1.93
52557--52883	141	2.3	141	87	3	464	25	13	29	31	1.94
52892--53332	90	4.9	90	90	1	672	25	19	21	32	1.97
52891--53332	181	2.5	180	92	2	710	25	19	21	32	1.97
53344--53699	136	2.6	136	91	0	572	32	17	22	28	1.96
54033--54065	3	10.7	3	93	6	57	36	0	0	63	0.95
55932--55968	16	2.3	16	85	0	56	27	5	5	62	1.39
57074--57126	27	2.0	26	82	10	63	71	0	3	24	1.02
57374--57415	17	2.5	17	81	11	52	69	2	4	23	1.20
57770--57907	37	3.8	36	83	6	163	30	13	13	42	1.84
57804--57904	34	2.9	35	89	8	152	28	13	13	43	1.83
58453--59384	105	9.0	105	91	2	1425	22	17	26	33	1.96
58452--59384	313	3.0	313	91	3	1436	22	17	26	33	1.96
60027--60181	68	2.4	63	84	7	195	34	9	22	32	1.87
60160--60280	36	3.4	36	80	7	131	41	13	20	24	1.88
61243--61286	22	2.0	22	91	8	72	27	11	22	38	1.88
61885--61930	7	6.6	7	80	14	51	0	10	2	86	0.64
61885--61921	8	4.6	8	90	9	58	0	10	2	86	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61886--61944	28	2.0	30	87	6	86	1	15	3	79	0.94
66250--66293	18	2.6	17	85	7	63	68	2	4	25	1.20
66683--66784	34	2.9	36	85	14	149	27	14	14	43	1.85
68519--68696	41	4.3	41	92	2	286	33	18	16	31	1.94
68719--68802	44	1.9	43	88	7	125	32	17	16	33	1.93
69617--69662	21	2.2	21	92	0	74	54	17	8	19	1.68
79672--79722	20	2.6	20	87	3	68	29	15	9	45	1.79
81797--81821	12	2.1	12	100	0	50	48	0	8	44	1.32
81756--81862	53	2.0	53	90	3	171	36	12	18	32	1.88
81809--82020	41	5.2	41	86	2	282	33	13	19	34	1.90
82156--82244	41	2.2	40	80	9	99	32	10	22	34	1.88

Tables:   1

The End!