Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004323.1 Hibiscus syriacus cultivar Beakdansim tig00009479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110216

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3038--3063
13
2.0
13
100
0
52
61
0
15
23
1.33
8966--9015
26
2.0
25
88
4
73
50
8
16
26
1.72
10059--10099
19
2.2
19
100
0
82
34
26
12
26
1.92
10778--10815
20
1.9
19
94
5
67
18
28
21
31
1.97
27310--27439
60
2.1
61
80
6
149
29
10
18
41
1.84
29305--29646
37
9.2
37
69
17
156
42
4
8
44
1.56
29325--29616
34
7.9
36
72
16
172
43
4
8
43
1.55
29656--29691
3
12.3
3
94
5
65
33
0
0
66
0.92
30939--30965
6
4.5
6
100
0
54
44
0
0
55
0.99
32555--32599
19
2.4
19
92
3
74
11
13
8
66
1.44
35922--36850
84
11.2
82
82
6
964
30
24
20
24
1.98
35914--36937
248
4.1
248
85
3
1283
30
24
20
24
1.98
35922--36856
328
2.8
327
86
4
1202
30
24
20
24
1.98
37552--37761
33
6.0
33
77
10
170
42
5
9
42
1.59
37558--37762
68
3.0
65
79
11
178
42
5
9
42
1.60
37841--37878
3
12.3
3
94
5
67
31
0
0
68
0.90
41034--41079
10
4.5
10
97
2
83
58
0
8
32
1.28
42099--42134
14
2.6
14
91
4
56
27
0
27
44
1.55
42172--42223
3
17.3
3
100
0
104
67
0
0
32
0.91
42258--42293
12
3.0
12
100
0
72
50
0
16
33
1.46
45169--45207
20
2.0
21
85
10
55
28
0
30
41
1.57
46687--46730
12
3.6
12
79
14
54
50
2
25
22
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46760--46842
39
2.1
39
93
0
139
27
6
15
50
1.67
47030--47091
31
2.0
32
87
9
92
50
9
8
32
1.65
47993--48149
86
1.8
85
94
1
278
27
13
14
44
1.83
48994--49070
31
2.5
30
85
8
100
28
9
11
50
1.69
50025--50097
31
2.4
31
85
0
101
47
13
8
30
1.72
50234--50269
6
6.0
6
100
0
72
0
16
50
33
1.46
53828--53871
22
2.0
22
100
0
88
9
18
40
31
1.81
53860--53917
29
2.0
29
89
0
89
13
36
27
22
1.92
53955--53993
10
4.0
9
84
15
51
23
33
30
12
1.92
53956--53993
20
1.9
20
94
0
67
23
34
28
13
1.92
53978--54064
33
2.6
33
83
0
111
25
25
39
10
1.87
54068--54152
29
2.9
29
92
0
143
21
30
35
12
1.91
54211--54267
29
2.0
29
92
0
96
21
29
33
15
1.94
55379--55450
19
3.9
19
78
10
87
30
0
2
66
1.06
55374--55424
9
6.0
8
75
20
50
27
0
1
70
0.98
55375--55444
35
2.0
35
100
0
140
28
0
2
68
1.04
55717--55743
4
6.8
4
100
0
54
74
0
25
0
0.83
59948--59988
4
9.8
4
89
10
64
73
0
2
24
0.96
61090--61150
30
2.0
30
100
0
122
22
31
26
19
1.98
66539--66566
4
7.0
4
100
0
56
25
0
25
50
1.50
67870--67927
29
2.0
29
83
6
73
39
13
10
36
1.79
74654--75008
183
2.0
181
97
1
665
31
21
11
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78424--78463
13
3.0
13
85
3
53
75
22
0
2
0.93
82480--82610
60
2.2
59
97
1
244
45
22
7
25
1.78
84364--84425
30
2.1
30
81
0
70
33
17
9
38
1.83
86316--86363
3
16.7
3
79
16
57
66
0
2
31
1.03
87730--87762
17
1.9
17
88
11
50
12
0
48
39
1.40
88200--88287
30
2.9
30
73
5
88
43
9
9
38
1.68
109841--110032
95
2.1
92
85
6
253
30
15
25
29
1.95

Tables:   1

The End!