genome.fa.s4324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004324.1 Hibiscus syriacus cultivar Beakdansim tig00009481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50976

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067--1236	41	4.2	41	86	5	215	32	24	20	22	1.98
1067--1236	80	2.1	79	83	6	209	32	24	20	22	1.98
5912--5949	17	2.2	17	90	0	58	55	31	0	13	1.38
10571--10615	20	2.3	20	88	3	65	37	0	24	37	1.56
11468--11822	70	5.1	69	86	5	473	26	18	23	31	1.97
11468--11822	140	2.5	140	92	1	579	26	18	23	31	1.97
16463--16507	20	2.3	20	88	3	65	37	0	22	40	1.54
17357--17574	70	3.1	70	85	2	278	26	18	24	30	1.98
21409--21453	20	2.3	20	84	3	56	35	0	26	37	1.57
22303--22524	70	3.2	70	82	3	252	25	18	22	32	1.97
27231--27276	20	2.3	20	88	3	67	39	0	21	39	1.54
28128--28349	70	3.2	70	84	2	268	27	18	22	31	1.97
35943--35983	18	2.3	18	87	4	57	41	7	14	36	1.74
36124--36162	20	2.0	20	89	0	60	41	20	7	30	1.80
37380--37426	25	1.9	25	86	4	69	53	6	2	38	1.39
37474--38312	418	2.0	410	82	7	1023	42	8	9	39	1.68
40293--40343	26	2.0	26	84	7	68	27	17	25	29	1.98
40735--40785	18	2.9	17	82	5	66	43	7	13	35	1.73
40731--40802	17	4.1	17	80	8	83	41	8	13	36	1.75
41185--41316	70	1.9	70	92	3	221	21	18	27	32	1.97
42132--42159	9	3.1	9	100	0	56	46	32	0	21	1.52

Tables:   1

The End!