Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004325.1 Hibiscus syriacus cultivar Beakdansim tig00009483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96520
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Found at i:4088 original size:39 final size:39
Alignment explanation
Indices: 4006--4080 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
3996 AGTTAAATAT
* ** *
4006 GAAGACTCCACGACTGCATGTCGTCTTCAGGCAAATAAA
1 GAAGACTCCACAACTGCATAACGTCTTCAGACAAATAAA
4045 GAAGACTCCACAACTGCATAACGTCTTCAGACAAAT
1 GAAGACTCCACAACTGCATAACGTCTTCAGACAAAT
4081 TGAGAAGATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (39 bp):
GAAGACTCCACAACTGCATAACGTCTTCAGACAAATAAA
Found at i:19534 original size:229 final size:229
Alignment explanation
Indices: 19129--19616 Score: 863
Period size: 229 Copynumber: 2.1 Consensus size: 229
19119 GTAAAGTATC
* * * *
19129 TATCCTTTTTATAAAAGTGTCCATATTTATTTCACTGTGAAAATATATTTATTATTATCTTTGGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTGGT
19194 TAATATTGTTAAATTTAAATTATAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAATTATAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
*
19259 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATT
131 TGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATT
19323 GAAACATAAATTACATAAC-TTAAAAAAATATATA
196 GAAACATAAATTACATAACTTTAAAAAAA-ATATA
19357 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATTATATTTGG
* *
19422 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATTAAAACAATCAAATAATTTT
65 TTAATATTGTTAAATTTAAATTATAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTT
19487 TTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAT
130 TTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAT
* *
19552 TGAAACATAAATTACATAACTTTAAAAAAAGTGTA
195 TGAAACATAAATTACATAACTTTAAAAAAAATATA
19587 TATCATTTTTATAAAAGTGTCCATACTTAT
1 TATCATTTTTATAAAAGTGTCCATACTTAT
19617 AAAAATAGGT
Statistics
Matches: 248, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
228 36 0.15
229 142 0.57
230 61 0.25
231 9 0.04
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (229 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTGGT
TAATATTGTTAAATTTAAATTATAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
TGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATT
GAAACATAAATTACATAACTTTAAAAAAAATATA
Found at i:19897 original size:20 final size:19
Alignment explanation
Indices: 19874--19920 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
19864 TGATATACCA
19874 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
19894 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
19914 GGTAAAA
1 GGTAAAA
19921 CGTTACTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:19997 original size:181 final size:182
Alignment explanation
Indices: 19671--20134 Score: 644
Period size: 181 Copynumber: 2.6 Consensus size: 182
19661 CCGGTTCATG
* * * *
19671 TCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGATAAAACCGGT
1 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGATAAAACCGGT
* * * * *
19735 AAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTCGTGAATTT
65 AAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTT
* * *
19800 AAAAGAGAAACAGTTTTAAATCCTATAAAGTGTCGATACTTTTAAAAAATGTA
130 AAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
* ** * *
19853 TCGATCTAGTATGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
1 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
* * * * *
19918 AAACGTTACTGGATATATTGAACGTGTCGATA-TTTTATATAAGGATCGACACTTTGTGAATTTA
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
* ** *
19982 AAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAAAAAAATATA
131 AAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
*
20034 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGGTA
1 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
* *
20099 AAATGATACCGAATATATTGAAAGTGTCGATACTTT
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTT
20135 CGTAAGTACG
Statistics
Matches: 245, Mismatches: 35, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
181 162 0.66
182 83 0.34
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
AAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAATATA
Found at i:20078 original size:20 final size:19
Alignment explanation
Indices: 20055--20101 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
20045 CGATATAACA
20055 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
20075 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
20095 GGTAAAA
1 GGTAAAA
20102 TGATACCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:20103 original size:17 final size:19
Alignment explanation
Indices: 20064--20106 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
20054 AGGTAAAAAT
20064 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
20084 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
20101 ATGATA
1 ATGATA
20107 CCGAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:22340 original size:21 final size:21
Alignment explanation
Indices: 22314--22378 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
22304 AAGACAATCA
*
22314 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
22335 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
22356 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
22377 AG
1 AG
22379 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:22454 original size:33 final size:33
Alignment explanation
Indices: 22412--22477 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
22402 AAATAGATGG
*
22412 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
22445 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
22478 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:22688 original size:21 final size:21
Alignment explanation
Indices: 22662--22702 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22652 GAAAAAATAT
22662 GAAGAAGAAAAGAGGGAAGAG
1 GAAGAAGAAAAGAGGGAAGAG
* *
22683 GAAGAAGAAGAGATGGAAGA
1 GAAGAAGAAAAGAGGGAAGA
22703 AATGAGTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.02
Consensus pattern (21 bp):
GAAGAAGAAAAGAGGGAAGAG
Found at i:24289 original size:19 final size:19
Alignment explanation
Indices: 24265--24313 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
24255 AATGTAGGGT
24265 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
24284 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
24303 TAATTTTGTAT
1 TAATTTTGTAT
24314 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:24746 original size:199 final size:200
Alignment explanation
Indices: 24405--25762 Score: 2561
Period size: 199 Copynumber: 6.9 Consensus size: 200
24395 ATACACATTA
*
24405 AGGGTGCAACCATAAAGTGTCGAACCATATAATAAAAAGTGTCGATCCCAAAAACATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATAT-ATAAAAAGTGTCGATCCCAAAAACATCGAAAACC
24470 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTTATGAGAGA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
*
24534 ATATGTCTAAATAATGTGTCTACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
130 ATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
24599 GAAAAC
195 GAAAAC
24605 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACC-
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
24669 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
24734 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
24799 AAAAC
196 AAAAC
24804 AGGGTGCAACCATAAAGTGTCG--------AT---AAGTGTCGATCCCAAAAACATC-AAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
24857 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
24922 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
24987 AAAAC
196 AAAAC
*
24992 AGGGTGCAACCATAAAGTGTCTATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
25057 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
25122 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
25187 AAAAC
196 AAAAC
25192 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
25256 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
25321 TATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
25385 AAAAC
196 AAAAC
25390 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
25455 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
25520 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
25585 AAAAC
196 AAAAC
25590 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
25654 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
25719 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
25763 CTAATTTAAA
Statistics
Matches: 1138, Mismatches: 4, Indels: 33
0.97 0.00 0.03
Matches are distributed among these distances:
187 6 0.01
188 178 0.16
191 2 0.00
196 2 0.00
198 129 0.11
199 526 0.46
200 295 0.26
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
AAAAC
Found at i:27237 original size:6 final size:6
Alignment explanation
Indices: 27226--27289 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
27216 CAAGCGGTCA
* * * * *
27226 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* *
27274 CTGACG ATGAAG ATGA
1 ATGAAG ATGAAG ATGA
27290 TGACGATGAT
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.19
Consensus pattern (6 bp):
ATGAAG
Found at i:27258 original size:24 final size:24
Alignment explanation
Indices: 27226--27307 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 24
27216 CAAGCGGTCA
* *
27226 ATGAAGATGAAGCTGACGATGAAG
1 ATGACGATGAAGATGACGATGAAG
*
27250 ATGACGATGATGATGACGATGAAG
1 ATGACGATGAAGATGACGATGAAG
* * * *
27274 CTGACGATGAAGATGATGACGATG
1 ATGACGATGAAGATGACGATGAAG
*
27298 ATGATGATGA
1 ATGACGATGA
27308 TGATCCAAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.38, C:0.09, G:0.33, T:0.21
Consensus pattern (24 bp):
ATGACGATGAAGATGACGATGAAG
Found at i:27263 original size:3 final size:3
Alignment explanation
Indices: 27243--27311 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
27233 TGAAGCTGAC
* * * * * * *
27243 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GAC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
27291 GAC GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT
27312 CCAAACAAGT
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.36, C:0.07, G:0.33, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:27278 original size:36 final size:36
Alignment explanation
Indices: 27226--27307 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
27216 CAAGCGGTCA
*
27226 ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
* *
27262 ATGACGATGAAGCTGACGATGAAGATGATGACGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
*
27298 ATGATGATGA
1 ATGAAGATGA
27308 TGATCCAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.38, C:0.09, G:0.33, T:0.21
Consensus pattern (36 bp):
ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
Found at i:27301 original size:12 final size:12
Alignment explanation
Indices: 27226--27289 Score: 92
Period size: 12 Copynumber: 5.3 Consensus size: 12
27216 CAAGCGGTCA
*
27226 ATGAAGATGAAG
1 ATGACGATGAAG
*
27238 CTGACGATGAAG
1 ATGACGATGAAG
*
27250 ATGACGATGATG
1 ATGACGATGAAG
27262 ATGACGATGAAG
1 ATGACGATGAAG
*
27274 CTGACGATGAAG
1 ATGACGATGAAG
27286 ATGA
1 ATGA
27290 TGACGATGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.19
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:27302 original size:12 final size:12
Alignment explanation
Indices: 27239--27311 Score: 83
Period size: 12 Copynumber: 5.8 Consensus size: 12
27229 AAGATGAAGC
*
27239 TGACGATGAAGA
1 TGACGATGATGA
27251 TGACGATGATGA
1 TGACGATGATGA
* *
27263 TGACGATGAAGC
1 TGACGATGATGA
27275 TGACGATGAAGATGA
1 TGACGAT---GATGA
27290 TGACGATGATGA
1 TGACGATGATGA
*
27302 TGATGATGAT
1 TGACGATGAT
27312 CCAAACAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
12 42 0.81
15 10 0.19
ACGTcount: A:0.36, C:0.08, G:0.33, T:0.23
Consensus pattern (12 bp):
TGACGATGATGA
Found at i:31106 original size:25 final size:25
Alignment explanation
Indices: 31074--31138 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
31064 TTATCATTAA
*
31074 ATTTAGGTATGTACAATAATTACAT
1 ATTTAGGTATGTACAATAACTACAT
31099 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
31124 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
31139 TCTTTTGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:31520 original size:23 final size:23
Alignment explanation
Indices: 31481--31552 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
31471 ATAGGTAAAA
* *
31481 ATATGATGT-ATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
31503 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
31526 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
31549 ATAT
1 ATAT
31553 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 8 0.18
23 36 0.82
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:31998 original size:23 final size:23
Alignment explanation
Indices: 31967--32039 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
31957 ATAGGTAAAA
*
31967 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
31990 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
32013 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
32036 ATAT
1 ATAT
32040 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:32192 original size:485 final size:483
Alignment explanation
Indices: 31138--32205 Score: 1933
Period size: 484 Copynumber: 2.2 Consensus size: 483
31128 AGGTATATAC
*
31138 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
31203 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTAC-GTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
31268 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAACAATCAAATAA
130 TTTGGTTAATATTGTTAAATTAAAACTCTAAATATTATTTTATAAAATATCAAACAATCAAATAA
*
31333 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
195 TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
* *
31398 ATTGTAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACACT
260 ATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
31463 TTCATATAATAGGTAAAAATATGATGTATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTAT
325 TTCATATAATAGGTAAAAATATGATGTATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTAT
31528 ATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTT
390 ATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTT
*
31593 TTTCACTGTGGAAACATTAATTTAAGGTT
455 TTTCACTGTGAAAACATTAATTTAAGGTT
31622 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
31687 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATA-TTATTATTATC
66 GTTACG-TATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
31751 TTTGGTTAATATTGTTAAATTAAAAACTCTAAATATTATTTTAT-AAATATCAAAACAATCAAAT
130 TTTGGTTAATATTGTTAAATT-AAAACTCTAAATATTATTTTATAAAATATC-AAACAATCAAAT
31815 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
193 AA-TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
31880 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
257 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
* *
31945 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCG
322 ACTTTC-ATATAATAGGTAAAAATATGATGT-ATAGGTAGCACTTATATAATGTAATAGGTAGCG
* * *
32010 TTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTAT
385 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCAT
32075 ACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
450 ACTTTTTTCACTGTG-AAAACATTAATTTAAGGTT
32110 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
32175 GTTACGATATATATTATTATTAAATTAAAAA
66 GTTACG-TATATATTATTATTAAATTAAAAA
32206 TTCTAAATAT
Statistics
Matches: 565, Mismatches: 12, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
483 40 0.07
484 149 0.26
485 130 0.23
486 24 0.04
487 108 0.19
488 114 0.20
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.41
Consensus pattern (483 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
GTTACGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
TTGGTTAATATTGTTAAATTAAAACTCTAAATATTATTTTATAAAATATCAAACAATCAAATAAT
TTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
TTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
TCATATAATAGGTAAAAATATGATGTATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATA
TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
TTCACTGTGAAAACATTAATTTAAGGTT
Found at i:32429 original size:23 final size:23
Alignment explanation
Indices: 32398--32470 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
32388 ATAGGTAAAA
*
32398 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
32421 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
32444 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
32467 ATAT
1 ATAT
32471 TGTAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:32610 original size:431 final size:431
Alignment explanation
Indices: 31760--32868 Score: 2079
Period size: 431 Copynumber: 2.6 Consensus size: 431
31750 CTTTGGTTAA
* *
31760 TATTGTTAAATTAAAAACTCTAAATATTATTTTAT-AAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
31824 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
31888 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
31953 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
32018 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
*
32083 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACAGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
32148 ATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATAT
*
32189 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
32254 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
32319 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
32384 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
32449 ATGTAATAGGTAGTGGTTATATTGTAAAATATCTATCTTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
32514 CACAGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACAGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
*
32579 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATAT
32620 TATTATTAAATTAAAAATTCTAAATATTA-TTTATAAAATATCAAAACAATCAAATAA-TTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
32683 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
32748 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTC-A
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
32812 -ATAATAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTT
32869 GTGTAAATCC
Statistics
Matches: 666, Mismatches: 12, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
426 47 0.07
427 9 0.01
428 1 0.00
429 165 0.25
430 107 0.16
431 337 0.51
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (431 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
ATGTAATAGGTAGTGGTTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
CACAGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
ATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATAT
Found at i:33637 original size:25 final size:25
Alignment explanation
Indices: 33609--33673 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
33599 TTATCATTAA
* *
33609 ATTTAGGTATGTACAATAATTACAT
1 ATTTAGGTATATACAATAACTACAT
*
33634 ATTTAGGTATCTACAATAACTACAT
1 ATTTAGGTATATACAATAACTACAT
33659 ATTTAGGTATATACA
1 ATTTAGGTATATACA
33674 TCTTTTGAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (25 bp):
ATTTAGGTATATACAATAACTACAT
Found at i:34042 original size:23 final size:23
Alignment explanation
Indices: 34016--34088 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
34006 AATAGGTAAA
*
34016 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
34039 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
34062 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
34085 ATAT
1 ATAT
34089 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:34530 original size:23 final size:23
Alignment explanation
Indices: 34499--34571 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
34489 ATAGGTAAAA
*
34499 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
34522 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
34545 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
34568 ATAT
1 ATAT
34572 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:34582 original size:483 final size:484
Alignment explanation
Indices: 33673--34725 Score: 1927
Period size: 483 Copynumber: 2.2 Consensus size: 484
33663 AGGTATATAC
33673 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGA-TTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
33737 GTTACGGTATATATATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCT
66 GTTAC-G-ATATATATTATTAAATTAAAAACAATAAACA-ATATATTACATATTTATTATTATAT
*
33802 TTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAA
128 TTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAA
*
33867 TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
193 TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
* *
33932 AATTGTAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACAC
258 AATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACAC
33997 TTTCAATATAATAGGTAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
323 TTTCAATATAATAGGTAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
34062 ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
388 ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
*
34127 TTTTTCACTGTGGAAAACATTAATTTAAGGTT
453 TTTTTCACTGTGAAAAACATTAATTTAAGGTT
*
34159 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
34224 GTTACGATATATATTATTAAATTAAAAACAATAAAC-ATATATTACATATTTATTATTATATTTG
66 GTTACGATATATATTATTAAATTAAAAACAATAAACAATATATTACATATTTATTATTATATTTG
34288 GTTAATATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
131 GTTAATATTGTTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
34353 TTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
195 TTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAA
34418 ATTGAAACATAAA-TACATAACTTT-AAAGAAGTATCGATCCTTTTTAT-AAAAGTATGGACACT
259 ATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
*
34480 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
324 TTCAATATAATAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
* *
34545 ATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACT
388 ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
34610 TTTTTCACTGTGAAAAACATTAATTTAAGGTT
453 TTTTTCACTGTGAAAAACATTAATTTAAGGTT
34642 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
34707 GTTACGATATATATTATTA
66 GTTACGATATATATTATTA
34726 TTAAATTAAA
Statistics
Matches: 552, Mismatches: 11, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
482 30 0.05
483 291 0.53
484 114 0.21
485 48 0.09
486 54 0.10
487 15 0.03
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (484 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTAAATTAAAAACAATAAACAATATATTACATATTTATTATTATATTTG
GTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
TTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAT
TGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT
CAATATAATAGGTAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
TTCACTGTGAAAAACATTAATTTAAGGTT
Found at i:34960 original size:23 final size:23
Alignment explanation
Indices: 34929--35001 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
34919 ATAGGTAAAA
* *
34929 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGTTT
34952 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
34975 ATATAATGTAATAAGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
34998 ATAT
1 ATAT
35002 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:35197 original size:427 final size:430
Alignment explanation
Indices: 34293--35397 Score: 2023
Period size: 427 Copynumber: 2.6 Consensus size: 430
34283 ATTTGGTTAA
*
34293 TATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
34358 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
34423 AACATAAA-TACATAACTTT-AAAGAAGTATCGATCCTTTTTAT-AAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
*
34485 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
*
34550 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAAGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACTTTTTT
34615 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGAAAAACATTAATTTAAGGTTA-CTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
34680 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
390 ATAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
34721 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
34786 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
34850 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGATACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
34915 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
* * *
34980 ATGTAATAAGTAGTGTTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCTATAC-TTTTT
261 ATGTAATAAGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACTTTTTT
*
35044 CACTGTGGAAAACATTAATTTAAGGTTA-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 CACTGTGAAAAACATTAATTTAAGGTTACTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
35108 TAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
391 TAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
*
35148 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
35213 TGCAAATG-AA--ATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
35275 AACAT-AATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
35339 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
35398 GTGTAAATCC
Statistics
Matches: 660, Mismatches: 13, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
424 157 0.24
425 16 0.02
426 2 0.00
427 165 0.25
428 128 0.19
429 54 0.08
430 138 0.21
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.38
Consensus pattern (430 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
ATGTAATAAGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACTTTTTT
CACTGTGAAAAACATTAATTTAAGGTTACTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
TAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
Found at i:36166 original size:25 final size:25
Alignment explanation
Indices: 36138--36202 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
36128 TTATCATTAA
*
36138 ATTTAGGTATGTACAATAATTACAT
1 ATTTAGGTATGTACAATAACTACAT
36163 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
36188 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
36203 TCTTTTGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:36577 original size:23 final size:23
Alignment explanation
Indices: 36546--36618 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
36536 ATAGGTAAAA
*
36546 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
36569 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
36592 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
36615 ATAT
1 ATAT
36619 GTAAAGTATC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:37067 original size:23 final size:23
Alignment explanation
Indices: 37036--37108 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
37026 ATAGGTAAAA
*
37036 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
37059 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
37082 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
37105 ATAT
1 ATAT
37109 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:37187 original size:490 final size:487
Alignment explanation
Indices: 36202--37273 Score: 1986
Period size: 490 Copynumber: 2.2 Consensus size: 487
36192 AGGTATATAC
36202 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT-AC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
*
36266 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
36331 TTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAA
131 TTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAA
* *
36396 TTTTTTGTGTAAATGAAATTATTTAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
196 TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
* *
36461 AATTGTAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACAC
261 AATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACAC
36526 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
326 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
36591 TATATAATGTAATAGGTAGTGCTTATATGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
391 TATATAATGTAATAGGTAGTGCTTATATGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
*
36656 TTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 TTTTTCACTGTGAAAAACATTAATTTAAGGTT
36688 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
36753 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
36818 TTTGGTTAATATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
131 -TTGGTTAATATTGTTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
36883 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
194 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AA
36948 AAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGA
258 AAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGA
*
37013 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATC
323 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
* * *
37078 GTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTA
388 GTTTATATAATGTAATAGGTAGTGCTTATA-TGTAAAGTATCTATCATTTTTATAAAAGTGTCCA
37143 TACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
452 TACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
*
37179 AT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCATCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
37243 GTTACGATATATATTATTATTAAATTAAAAA
66 GTTACGATATATATTATTATTAAATTAAAAA
37274 TTCTAAATAT
Statistics
Matches: 569, Mismatches: 12, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
486 62 0.11
487 66 0.12
488 20 0.04
489 102 0.18
490 250 0.44
491 69 0.12
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (487 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAA
TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
AATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACAC
TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
TATATAATGTAATAGGTAGTGCTTATATGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACT
TTTTTCACTGTGAAAAACATTAATTTAAGGTT
Found at i:38285 original size:25 final size:25
Alignment explanation
Indices: 38253--38317 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
38243 TTATCATTAA
*
38253 ATTTAGGTATGTACAATAATTACAT
1 ATTTAGGTATGTACAATAACTACAT
38278 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
38303 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
38318 TCTTTTGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:38694 original size:23 final size:23
Alignment explanation
Indices: 38663--38735 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
38653 ATAGGTAAAA
*
38663 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
38686 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
38709 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
38732 ATAT
1 ATAT
38736 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:39204 original size:21 final size:23
Alignment explanation
Indices: 39154--39224 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
39144 ATAGGTAAAA
*
39154 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
39177 ATATAATGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
* *
39199 -TATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
39221 ATAT
1 ATAT
39225 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.40
22 4 0.10
23 21 0.50
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:39228 original size:21 final size:21
Alignment explanation
Indices: 39160--39229 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
39150 AAAAATATGA
*
39160 TGTAATAGGTAGCGCTTATAT
1 TGTAATAGGTAGTGCTTATAT
* *
39181 AATGTAATAGGTA-TCGTTTATAA
1 --TGTAATAGGTAGT-GCTTATAT
*
39204 TGTAATAGGTAGTGGTTATAT
1 TGTAATAGGTAGTGCTTATAT
39225 TGTAA
1 TGTAA
39230 AGTATCTATC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 22 0.55
22 1 0.03
23 17 0.43
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (21 bp):
TGTAATAGGTAGTGCTTATAT
Found at i:39235 original size:489 final size:489
Alignment explanation
Indices: 38317--39389 Score: 1990
Period size: 489 Copynumber: 2.2 Consensus size: 489
38307 AGGTATATAC
*
38317 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
*
38382 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
38447 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
38512 ATTTTTTGTGTAAATGAAATTATTTAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
38577 AAATTGTAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACA
38642 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
38707 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
*
38772 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
38806 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
38871 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
38936 TTTGGTTAATATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
131 TTTGGTTAATATTGTTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
39001 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AA
39066 AAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGA
259 AAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGA
*
39131 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATC
324 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
* * *
39196 G-TT-TATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTA
389 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCA
39259 TACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
454 TACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
*
39295 AT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCATCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
39359 GTTACGATATATATTATTATTAAATTAAAAA
66 GTTACGATATATATTATTATTAAATTAAAAA
39390 TTCTAAATAT
Statistics
Matches: 569, Mismatches: 13, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
488 92 0.16
489 243 0.43
490 104 0.18
491 130 0.23
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (489 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
Found at i:39612 original size:23 final size:23
Alignment explanation
Indices: 39581--39653 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
39571 ATAGGTAAAA
*
39581 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * **
39604 ATATAATGTAATATGTATCATTT
1 ATATAATGTAATAGGTAGCGCTT
* *
39627 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
39650 ATAT
1 ATAT
39654 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:39678 original size:46 final size:45
Alignment explanation
Indices: 39581--39678 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
39571 ATAGGTAAAA
* *
39581 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCATTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTATCATTT
* * *
39627 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATCTATCTTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTATCATTT
*
39673 TTATAA
1 ATATAA
39679 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTATCATTT
Found at i:39865 original size:430 final size:431
Alignment explanation
Indices: 38945--41403 Score: 2923
Period size: 430 Copynumber: 5.6 Consensus size: 431
38935 CTTTGGTTAA
*
38945 TATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
39010 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
39075 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
39140 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATC-GTT-TATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATA
* *
39203 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
*
39268 CACTGTGAAAAACATTAATTTAAGGTTAT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
39332 ATAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*
39373 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
39438 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
39502 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
39567 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCATTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATA
* *
39632 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCTATATTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
39697 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
*
39762 ATAGGTGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*
39803 TATTATTAAATTAAAATTTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
39868 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
39933 AACATAAATTACATAATTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
39998 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATA
40063 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGT-TCATACTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCT-ATA-TTTTT
40127 TT-ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
324 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
*
40191 TTATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATAT
389 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*** * * * * ** ** ** **
40234 TATTATTAAATTAAAAAAAATAAACA-TA-TATACT-ACATATTTATTATTATC-TTTGGTTAAT
1 TATTATTAAATTAAAAATTCTAAATATTATTTTA-TAAAATA-TCAAAACAATCAAATAATT--T
* * * * * * * ** ** * * * * *
40295 ATTGT-TAAATTAAAAATT-CTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTT
62 TTTGTGCAAA-T-GAAATTATTAAAT-TAATATTGT-AGGT-GGAAAAC-ATGAAA-CACTATTA
**** * *** ** * *
40358 GTGCAAA-TGAAATTATTAAATTA-AT-A-TTGTAGGTGGAAAACAT-GAAACAC-TATTA-AAA
120 AAAAAAATTGAAA-CA-TAAATTACATAACTT-TA-AAAG-AAGTATCG-ATC-CTTTTTATAAA
* * * * ** * * *
40416 AA--ATTGAAAC-ATAAAT-TACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATG
178 AAGTATGGACACTTTCAATATA-AT-A-GGT-AAA-AA-TAT-GA-------TGTAATAGGTA--
* * * ** * *
40477 GACACTT-T-CAATATAATAGGTA--A-AAATATGATGTAATAGGTAGCGCTTATATAATGT-AA
227 G-CGCTTATATAATGTAATAGGTAGCATTTATATAATGTAATAGGTAGTGCTTATAT--TGTAAA
** * * * **
40536 -TAGGTATCGTTTATATAATGTAATAGGTAGTGGT-TATATTGTAAAGTATCTATCATTTTTATA
289 GTATCTATCCTTT-T-T-A--TAA-A---AGT-GTCTATATT-T----T-T-T-TCA-CTGTGGA
** * ** * * * * * *
40599 AAAGTGTCTATACTTTTTTCACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
335 AAA----C-AT--TAATTT-A-AG-G-TTATC--T--TTTGA-GTGA-GTTTT-A-AGA-TATTA
** *
40664 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
380 ATTTAGTAA-TT-------ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
40724 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
40789 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
* *
40853 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGATACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
40918 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATA
* * * *
40983 ATGTAATAAGTAGTGTTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
41048 CACTGTGGAAAACATTAATTTAAGGTTAT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
41112 ATAGGCATCTAATGATTTATTTTTCACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*
41153 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
41218 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
41283 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
41348 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
41404 GTTGTGTAAA
Statistics
Matches: 1723, Mismatches: 191, Indels: 232
0.80 0.09 0.11
Matches are distributed among these distances:
427 131 0.08
428 118 0.07
429 261 0.15
430 332 0.19
431 326 0.19
432 20 0.01
433 9 0.01
434 14 0.01
435 14 0.01
436 22 0.01
437 29 0.02
438 6 0.00
439 3 0.00
440 4 0.00
441 3 0.00
442 4 0.00
444 35 0.02
445 3 0.00
446 12 0.01
447 14 0.01
448 3 0.00
449 8 0.00
450 2 0.00
451 4 0.00
452 2 0.00
453 9 0.01
454 4 0.00
457 1 0.00
458 7 0.00
459 4 0.00
460 2 0.00
461 2 0.00
462 7 0.00
466 4 0.00
467 10 0.01
469 4 0.00
470 2 0.00
471 8 0.00
472 3 0.00
473 15 0.01
474 12 0.01
475 4 0.00
476 32 0.02
477 4 0.00
478 3 0.00
479 4 0.00
480 1 0.00
481 4 0.00
482 13 0.01
483 21 0.01
484 16 0.01
485 13 0.01
486 14 0.01
487 11 0.01
488 4 0.00
489 11 0.01
490 73 0.04
491 12 0.01
492 10 0.01
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (431 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATA
ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
Found at i:40043 original size:23 final size:23
Alignment explanation
Indices: 40012--40084 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
40002 ATAGGTAAAA
*
40012 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
40035 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
40058 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
40081 ATAT
1 ATAT
40085 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:40533 original size:23 final size:23
Alignment explanation
Indices: 40502--40574 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
40492 ATAGGTAAAA
*
40502 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
40525 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
40548 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
40571 ATAT
1 ATAT
40575 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:40729 original size:490 final size:491
Alignment explanation
Indices: 39803--40740 Score: 1763
Period size: 490 Copynumber: 1.9 Consensus size: 491
39793 CGATATATAT
*
39803 TATTATTAAATTAAAATTTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
39868 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
39933 AACATAAATTACATAATTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
39998 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
*
40063 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTTTTT
* *
40128 TACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
40193 ATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAAAATAAA
391 ATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAAAATAAA
40258 CATATATACTACATATTTATTATTATCTTTGGTTAA
456 CATATATACTACATATTTATTATTATCTTTGGTTAA
*
40294 TATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
40359 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
40423 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
40488 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
*
40553 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTG-TCTATACTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTC-ATACTTTTT
40617 TCACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
325 TCACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
*
40682 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
390 TATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
40741 TTCTAAATAT
Statistics
Matches: 436, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
489 2 0.00
490 319 0.73
491 115 0.26
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (491 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTTTTT
CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
ATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAAAAATAAA
CATATATACTACATATTTATTATTATCTTTGGTTAA
Found at i:40963 original size:23 final size:23
Alignment explanation
Indices: 40932--41004 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
40922 ATAGGTAAAA
* *
40932 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGTTT
40955 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
40978 ATATAATGTAATAAGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
41001 ATAT
1 ATAT
41005 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:42182 original size:25 final size:25
Alignment explanation
Indices: 42150--42214 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
42140 TTATCATTAA
*
42150 ATTTAGGTATGTACAATAATTACAT
1 ATTTAGGTATGTACAATAACTACAT
42175 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
42200 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
42215 TCTTTTGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:42591 original size:23 final size:23
Alignment explanation
Indices: 42560--42632 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
42550 ATAGGTAAAA
*
42560 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
42583 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
42606 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
42629 ATAT
1 ATAT
42633 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:43081 original size:23 final size:23
Alignment explanation
Indices: 43050--43122 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
43040 ATAGGTAAAA
*
43050 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
43073 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
43096 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
43119 ATAT
1 ATAT
43123 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:43133 original size:490 final size:489
Alignment explanation
Indices: 42214--43289 Score: 2026
Period size: 490 Copynumber: 2.2 Consensus size: 489
42204 AGGTATATAC
42214 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
42279 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATC
*
42344 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
42409 ATTTTTTGTGTAAATGAAATTATTTAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
42474 AAATTGTAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTGTAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACA
42539 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
42604 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
*
42669 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
*
42703 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTCAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
42768 GTTACGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATC
42833 TTTGGTTAATATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
131 TTTGGTTAATATTGTTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
42898 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
42963 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
260 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
*
43028 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCG
325 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* * *
43093 TTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTAT
390 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCAT
43158 ACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
455 ACTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
43193 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
43258 GTTACGATATATATTATTATTAAATTAAAAAT
66 GTTACGATATATATTATTATTAAATTAAAAAT
43290 TCTAAATATT
Statistics
Matches: 572, Mismatches: 14, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
489 148 0.26
490 424 0.74
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (489 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGAAAAACATTAATTTAAGGTT
Found at i:43512 original size:23 final size:23
Alignment explanation
Indices: 43481--43553 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
43471 ATAGGTAAAA
* *
43481 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGTTT
43504 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
43527 ATATAATGTAATAAGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
43550 ATAT
1 ATAT
43554 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:43752 original size:29 final size:29
Alignment explanation
Indices: 43697--43753 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
43687 CGTTACGATA
* * *
43697 TATTTTATTAAATTAAAAATTCTAAATAT
1 TATTTTATAAAATAAAAAAATCTAAATAT
43726 TATTTTATAAAATAAAAACAATC-AAATA
1 TATTTTATAAAATAAAAA-AATCTAAATA
43754 ATTTTTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (29 bp):
TATTTTATAAAATAAAAAAATCTAAATAT
Found at i:43937 original size:23 final size:23
Alignment explanation
Indices: 43906--43978 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
43896 ATAGGTAAAA
*
43906 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * **
43929 ATATAATGTAATATGTATCATTT
1 ATATAATGTAATAGGTAGCGCTT
* *
43952 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
43975 ATAT
1 ATAT
43979 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:44003 original size:46 final size:45
Alignment explanation
Indices: 43906--44003 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
43896 ATAGGTAAAA
* *
43906 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCATTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTATCATTT
* * *
43952 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTATCATTT
*
43998 TTATAA
1 ATATAA
44004 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTATCATTT
Found at i:44323 original size:431 final size:431
Alignment explanation
Indices: 42842--46298 Score: 6423
Period size: 431 Copynumber: 8.0 Consensus size: 431
42832 CTTTGGTTAA
*
42842 TATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
42907 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
42971 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
43036 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
43101 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
*
43166 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
43231 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
43272 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
43337 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
* * *
43402 AACATAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAATTATGGATACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
43467 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
* * *
43532 ATGTAATAAGTAGTGTTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
43597 CACTGTGGAAAACATTAATTTAAGGTTAT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
43661 ATAGGCATCTAATGATTTATTTTTCACGTTACG--ATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
43700 T-TTATTAAATTAAAAATTCTAAATATTATTTTATAAAATA--AAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
43762 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
43827 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
43892 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCATTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
43957 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
44022 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
*
44087 ATAGGTGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
*
44128 TATTATTAAATTAAAATTTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
44193 TGCAAATGAAATTATTAAATTAATATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
* *
44258 AACATAAATTACATAATTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
44323 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
44388 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
44453 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
44518 ATAGGCGTCTAATGGTTTATTTTTCACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
44559 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
44624 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
44689 AACATAAATTACATAACTTTAAAAGAAGTATCAATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* * *
44754 TATAATAGGTAAAAATATGGTGTAATAAGTAGCGTTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
* *
44819 ATGTAATAGGTAGTGGTTATATTGTAAAGTATATATCCTTTTTATAAAAGTGTCTATATTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATA-CTTTTT
*
44884 TCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
325 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
*
44949 TATAGGCGTCTAATGATTTATTTTTTACGTTACAATATATAT
390 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
44991 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
* *
45056 TGCAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTTAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
45121 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
45186 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
45251 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTATATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
*
45316 CACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
45381 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
45422 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
45487 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
45551 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATAGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
45616 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
45681 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
45746 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
*
45811 ATAGGCGTCTAATGATTTATTTTTCACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
45852 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
45917 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
*
45981 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACATTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
46046 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
* *
46111 ATGTAATAGGTAGTGCTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGT-TCATACTTTTG
261 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCT-ATACTTTT-
46175 TT-ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
324 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
*
46239 TTATAGGCGTCTAATAATTTATTTTTTACGTTACGATATATAT
389 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
46282 TATTATTAAATTAAAAA
1 TATTATTAAATTAAAAA
46299 CAATAAACAT
Statistics
Matches: 2941, Mismatches: 76, Indels: 20
0.97 0.03 0.01
Matches are distributed among these distances:
425 301 0.10
426 65 0.02
427 39 0.01
428 14 0.00
429 39 0.01
430 926 0.31
431 1139 0.39
432 418 0.14
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (431 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
Found at i:44368 original size:23 final size:23
Alignment explanation
Indices: 44337--44409 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
44327 ATAGGTAAAA
*
44337 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
44360 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
44383 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
44406 ATAT
1 ATAT
44410 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:44794 original size:23 final size:23
Alignment explanation
Indices: 44774--44840 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
44764 AAAAATATGG
*
44774 TGTAATAAGTAGCGTTTATATAA
1 TGTAATAGGTAGCGTTTATATAA
*
44797 TGTAATAGGTATCGTTTATATAA
1 TGTAATAGGTAGCGTTTATATAA
* *
44820 TGTAATAGGTAGTGGTTATAT
1 TGTAATAGGTAGCGTTTATAT
44841 TGTAAAGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (23 bp):
TGTAATAGGTAGCGTTTATATAA
Found at i:45144 original size:863 final size:861
Alignment explanation
Indices: 42842--46298 Score: 6446
Period size: 856 Copynumber: 4.0 Consensus size: 861
42832 CTTTGGTTAA
*
42842 TATTGTTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
42907 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
42972 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
43037 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
43102 TGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
261 TGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
*
43167 ACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
43232 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAAT
43297 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
456 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
43362 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
521 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
* * *
43427 AAGTATCGATCATTTTTATAAAAATTATGGATACTTTCAATATAATAGGTAAAAATATGATGTAA
586 AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
* *
43492 TAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGTTTATATTGT
651 TAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGT
*
43557 AAAGTATTTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
716 AAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
*
43622 TTAT-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCATCTAATGATTTATTTTTC
781 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTC
43686 ACGTTACG--ATATAT
846 ACGTTACGATATATAT
43700 T-TTATTAAATTAAAAATTCTAAATATTATTTTATAAAATA--AAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
43762 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
43827 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* *
43892 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCATTTATATA
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
43957 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATATTTTTTT
260 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
44022 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
325 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
* *
44087 ATAGGTGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAATTTCTAAA
390 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAA
44152 TATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAAT
455 TATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAAT
* *
44217 ATTGTAAGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAATTTTAAAA
520 ATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
44282 GAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAATATAATAGGTAAAAATATGATGTA
585 GAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
44347 ATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
650 ATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTG
44412 TAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAG
715 TAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAG
*
44477 GTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGGTTTATTTTT
780 GTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
44542 CACGTTACGATATATAT
845 CACGTTACGATATATAT
44559 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
44624 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGA
*
44689 AACATAAATTACATAACTTTAAAAGAAGTATCAATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
* * *
44754 TATAATAGGTAAAAATATGGTGTAATAAGTAGCGTTTATATAATGTAATAGGTATCGTTTATATA
195 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
* *
44819 ATGTAATAGGTAGTGGTTATATTGTAAAGTATATATCCTTTTTATAAAAGTGTCTATATTTTTTT
260 ATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATA-CTTTTT
*
44884 TCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
324 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
*
44949 TATAGGCGTCTAATGATTTATTTTTTACGTTACAATATATATTATTATTAAATTAAAAATTCTAA
389 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAA
*
45014 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATAAAATTATTAAATTAA
454 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
*
45079 TATTGTAGGTGGAAAACATGAAACACTATTTAAAAAAATTGAAACATAAATTACATAACTTTAAA
519 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAA
45144 AGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
584 AGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
* *
45209 AATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATT
649 AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
* *
45274 GTAAAGTATCTATCCTTTTTATAAAAGTGTATATACTTTTTTCACTGTGAAAAACATTAATTTAA
714 GTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAA
45339 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
779 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
*
45404 TTACGTTACGATATATAT
844 TCACGTTACGATATATAT
45422 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
45487 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
45552 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATAGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
45617 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
196 ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
*
45682 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
261 TGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
45747 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
*
45812 TAGGCGTCTAATGATTTATTTTTCACGTTACGATATATATTATTATTAAATTAAAAATTCTAAAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAAT
45877 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
456 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
45942 TTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAG
521 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
*
46006 AAGTATCGATCCTTTTTATAAAAAGTATGGACATTTTCAATATAATAGGTAAAAATATGATGTAA
586 AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
46071 TAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGT
651 TAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGT
*
46136 AAAGTATTTATCCTTTTTATAAAAGTGT-TCATACTTTTGTT-ACTGTGGAAAACATTAATTTAA
716 AAAGTATCTATCCTTTTTATAAAAGTGTCT-ATACTTTT-TTCACTGTGGAAAACATTAATTTAA
*
46199 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATAATTTATTTT
779 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
*
46264 TTACGTTACGATATATAT
844 TCACGTTACGATATATAT
46282 TATTATTAAATTAAAAA
1 TATTATTAAATTAAAAA
46299 CAATAAACAT
Statistics
Matches: 2531, Mismatches: 58, Indels: 18
0.97 0.02 0.01
Matches are distributed among these distances:
855 75 0.03
856 651 0.26
857 104 0.04
858 1 0.00
859 8 0.00
860 357 0.14
861 228 0.09
862 460 0.18
863 647 0.26
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (861 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
ATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA
TGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAAT
ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
TAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGT
AAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTC
ACGTTACGATATATAT
Found at i:45231 original size:23 final size:23
Alignment explanation
Indices: 45200--45272 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
45190 ATAGGTAAAA
*
45200 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
45223 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
45246 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
45269 ATAT
1 ATAT
45273 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:45661 original size:23 final size:23
Alignment explanation
Indices: 45630--45702 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
45620 ATAGGTAAAA
*
45630 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
45653 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
45676 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
45699 ATAT
1 ATAT
45703 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:45727 original size:46 final size:45
Alignment explanation
Indices: 45630--45727 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
45620 ATAGGTAAAA
* * *
45630 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAGCTATCCTTT
* *
45676 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAGCTATCCTTT
*
45722 TTATAA
1 ATATAA
45728 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAGCTATCCTTT
Found at i:46091 original size:23 final size:23
Alignment explanation
Indices: 46060--46132 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
46050 ATAGGTAAAA
*
46060 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
46083 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
46106 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
46129 ATAT
1 ATAT
46133 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:51019 original size:22 final size:19
Alignment explanation
Indices: 50994--51045 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 19
50984 AGACAAAAAT
50994 ATTTTAATATTTCTATATTATA
1 ATTTTAATATTTC---ATTATA
51016 ATTTTAATAATTTCATTATA
1 ATTTTAAT-ATTTCATTATA
51036 ATATTTAATA
1 AT-TTTAATA
51046 ATAATTGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 9 0.32
21 6 0.21
22 8 0.29
23 5 0.18
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTAATATTTCATTATA
Found at i:51563 original size:2 final size:2
Alignment explanation
Indices: 51556--51612 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
51546 TAATGTTCTA
51556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51598 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
51613 CACACACTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52151 original size:19 final size:19
Alignment explanation
Indices: 52103--52151 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
52093 ATCGTCGGCG
* *
52103 TTTTCTATTATCTTTTTAT
1 TTTTCTATTATATCTTTAT
* *
52122 TTTTATGTTATATCTTTAT
1 TTTTCTATTATATCTTTAT
52141 TTTTCTATTAT
1 TTTTCTATTAT
52152 TTCTAATTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTCTATTATATCTTTAT
Found at i:52873 original size:9 final size:9
Alignment explanation
Indices: 52859--52888 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
52849 AAATTTGATT
52859 TTTTATTTA
1 TTTTATTTA
52868 TTTTATTTA
1 TTTTATTTA
52877 TTTTATTTA
1 TTTTATTTA
52886 TTT
1 TTT
52889 GCTTCTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTTA
Found at i:53052 original size:16 final size:18
Alignment explanation
Indices: 53031--53064 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
53021 AAACAAGTTT
53031 ATTT-AAAAT-TATTTTA
1 ATTTAAAAATATATTTTA
53047 ATTTAAAAATATATTTTA
1 ATTTAAAAATATATTTTA
53065 GTTATTAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 5 0.31
18 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAAAATATATTTTA
Found at i:53580 original size:111 final size:112
Alignment explanation
Indices: 53386--53664 Score: 497
Period size: 111 Copynumber: 2.5 Consensus size: 112
53376 TCAGGTAAAA
53386 AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
53451 TGATCCATAACAATATAACAGGT-AAAAAATGACAAAACCGGTCTAT
66 TGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
* *
53497 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTTGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
53562 TGATCCATAACAATATAACAGGTAAAAAAAATGACAAAACCGGTCTAT
66 TGATCCATAACAATATAACAGGT-AAAAAAATGACAAAACCGGTCTAT
* * *
53610 AAATGACAAAACAGGTAAAGCGTTACCAGATATGTTGATAGTGTCGATACTTTAT
1 AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTAT
53665 TATAAGTATC
Statistics
Matches: 159, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
111 86 0.54
113 73 0.46
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.25
Consensus pattern (112 bp):
AAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
TGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTAT
Found at i:54011 original size:181 final size:182
Alignment explanation
Indices: 53534--54160 Score: 920
Period size: 181 Copynumber: 3.5 Consensus size: 182
53524 GGATATATTG
* *
53534 AAAGTGTTGATACTTTATAAAAATGTATTGATCCATAACAATATAACAGGTAAAAAAAATGACAA
1 AAAGTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGT-AAAAATATGACAA
** * * * *
53599 AACCGGTCTATAAATGACAAAA-CAGGTAAAGCGTTACCAGATATGTTGATAGTGTCGATACTTT
65 AACCGGTCTCGAAATGACAAAATC-GGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTT
* *
53663 ATTATAAGTATCGACACTTTTGAAATTTAAAAGAGAAGAAGTTATAGCGCTAAT
129 ATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAAT
* * * *
53717 AAAGTGTAGATACTTTATAAAAATGTATTGATCCATAACAATAGAACATGTAAAAATATGACAAA
1 AAAGTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* * *
53782 ATCGGCCTCGAAATGACAAAATCGGTAAAGAACTACCGGATATGTTGAAAGTGTCGATACTTTAT
66 ACCGGTCTCGAAATGACAAAATCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTAT
53847 TATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAAT
131 TATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAAT
*
53899 AAAGTGTTGATAC-TTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAA
1 AAAGTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
*
53963 ACCGGTATCGAAATGACAAAATCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTAT
66 ACCGGTCTCGAAATGACAAAATCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTAT
*
54028 TATAAGTATCGACACTTTTAGAATTT-----A-AA-AA--TA-A-CGCCAAT
131 TATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAAT
* * *
54069 AAAGTGTCGATACTTTATGAAAATGTATCGATCTATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
* *
54134 ATCGATCTCGAAATGACAAAATCGGTA
66 ACCGGTCTCGAAATGACAAAATCGGTA
54161 GTAAAAAAGT
Statistics
Matches: 411, Mismatches: 31, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
170 19 0.05
171 73 0.18
172 2 0.00
174 2 0.00
175 2 0.00
176 1 0.00
181 134 0.33
182 129 0.31
183 49 0.12
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (182 bp):
AAAGTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
ACCGGTCTCGAAATGACAAAATCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTAT
TATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAAT
Found at i:54560 original size:20 final size:20
Alignment explanation
Indices: 54532--54570 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
54522 AAATCGATAA
*
54532 TTATTATGTAACAGGTAAAT
1 TTATAATGTAACAGGTAAAT
*
54552 TTATAATGTAACCGGTAAA
1 TTATAATGTAACAGGTAAA
54571 AATATACTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (20 bp):
TTATAATGTAACAGGTAAAT
Found at i:54576 original size:20 final size:20
Alignment explanation
Indices: 54537--54576 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
54527 GATAATTATT
**
54537 ATGTAACAGGTAAATTTATA
1 ATGTAACAGGTAAAAATATA
*
54557 ATGTAACCGGTAAAAATATA
1 ATGTAACAGGTAAAAATATA
54577 CTGGTTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTAACAGGTAAAAATATA
Found at i:54828 original size:23 final size:23
Alignment explanation
Indices: 54799--54846 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
54789 AAATTGGTCA
* *
54799 ATATAAGTGCTACCTATTACATT
1 ATATAAGCGCTACCTAATACATT
*
54822 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACCTAATACATT
54845 AT
1 AT
54847 TGTACTTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATACATT
Found at i:55563 original size:27 final size:28
Alignment explanation
Indices: 55519--55574 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
55509 TATGTATTAC
55519 AATTGATGAAATTATAAGATTT-TAATAA
1 AATTGATGAAATTATAAG-TTTATAATAA
* *
55547 AATT-ATGAGATTTTAAGTTTATAATAA
1 AATTGATGAAATTATAAGTTTATAATAA
55574 A
1 A
55575 TCATACTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 18 0.72
28 4 0.16
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (28 bp):
AATTGATGAAATTATAAGTTTATAATAA
Found at i:56260 original size:17 final size:18
Alignment explanation
Indices: 56224--56276 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 18
56214 AAAATAAATT
*
56224 ACAAGGCAGCAACAGGCA
1 ACAAGGCAGCAACAGCCA
*
56242 ACAA-GCAGCAACATCCA
1 ACAAGGCAGCAACAGCCA
* *
56259 AC-AGGCATCAATAGCCA
1 ACAAGGCAGCAACAGCCA
56276 A
1 A
56277 TATTTCTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 1 0.03
17 24 0.83
18 4 0.14
ACGTcount: A:0.45, C:0.30, G:0.19, T:0.06
Consensus pattern (18 bp):
ACAAGGCAGCAACAGCCA
Found at i:57666 original size:17 final size:17
Alignment explanation
Indices: 57629--57682 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 17
57619 TATAAACTAT
57629 ATAATTTATACATAGTATAA
1 ATAATTTATA-AT--TATAA
57649 ATAATTTATAATTATAA
1 ATAATTTATAATTATAA
* *
57666 ATAATATATAAATATAA
1 ATAATTTATAATTATAA
57683 GTTGTATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 20 0.62
19 2 0.06
20 10 0.31
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (17 bp):
ATAATTTATAATTATAA
Found at i:57710 original size:20 final size:18
Alignment explanation
Indices: 57609--57918 Score: 85
Period size: 20 Copynumber: 16.8 Consensus size: 18
57599 CCATACATAC
* *
57609 TATATATATATATA-AAC
1 TATATATTTATATATAAT
* *
57626 TATATAATTTATACATAGT
1 TATAT-ATTTATATATAAT
* *
57645 ATAAATAATTTATAATTATAAA
1 -TATAT-ATTTAT-A-TATAAT
* *
57667 TA-ATATATAAATATAAGT
1 TATATATTTATATATAA-T
*
57685 TGTATAGTTTATATATAAT
1 TATATA-TTTATATATAAT
*
57704 TCATATATAAATTATATATAAAA
1 T-ATATAT---TTATATAT-AAT
57727 TATATAATTTATATAT-A-
1 TATAT-ATTTATATATAAT
*
57744 TAGT-TA-ATATATATAAT
1 TA-TATATTTATATATAAT
* *
57761 ATATATACTTCATATATACAC
1 -TATATA-TTTATATATA-AT
*
57782 TATATAGTTTATATATAGTT
1 TATATA-TTTATATATA-AT
* * *
57802 TATACATAATATATATAGT
1 TATATAT-TTATATATAAT
*
57821 T-TATATATAGTATATAA-
1 TATATATTTA-TATATAAT
** *
57838 TA-ATATAAATATA-AAC
1 TATATATTTATATATAAT
*
57854 TATATAGTTTATATATAGT
1 TATATA-TTTATATATAAT
*
57873 T-TATA-TTA-ATA-AAC
1 TATATATTTATATATAAT
57887 TATATAGTTTATATAT-AT
1 TATATA-TTTATATATAAT
57905 TATAT-TATTATATA
1 TATATAT-TTATATA
57919 GTTTATATAT
Statistics
Matches: 220, Mismatches: 38, Indels: 70
0.67 0.12 0.21
Matches are distributed among these distances:
14 2 0.01
15 16 0.07
16 12 0.05
17 37 0.17
18 44 0.20
19 16 0.07
20 69 0.31
21 4 0.02
22 15 0.07
23 5 0.02
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (18 bp):
TATATATTTATATATAAT
Found at i:57753 original size:9 final size:9
Alignment explanation
Indices: 57609--57859 Score: 86
Period size: 9 Copynumber: 27.4 Consensus size: 9
57599 CCATACATAC
57609 TATAT-ATA
1 TATATAATA
57617 TATATAA-A
1 TATATAATA
57625 CTATATAAT-
1 -TATATAATA
57634 T-TATACATA
1 TATATA-ATA
57643 GTATA-AATAA
1 -TATATAAT-A
*
57653 TTTATAAT-
1 TATATAATA
57661 TATA-AATAA
1 TATATAAT-A
57670 TATATAA-A
1 TATATAATA
*
57678 TATA-AGT-
1 TATATAATA
* *
57685 TGTATAGTTTA
1 TATATA--ATA
57696 TATATAATTCA
1 TATATAA-T-A
57707 TATATAAATTA
1 TATAT-AA-TA
*
57718 TATATAAAA
1 TATATAATA
*
57727 TATATAATT
1 TATATAATA
57736 TATAT-ATA
1 TATATAATA
57744 TAGT-TAATA
1 TA-TATAATA
57753 TATATAATA
1 TATATAATA
*
57762 TATATACTTCA
1 TATATA-AT-A
57773 TATATACACTA
1 TATATA-A-TA
*
57784 TATAGT-TTA
1 TATA-TAATA
*
57793 TATATAGTTTA
1 TATATA--ATA
*
57804 TACATAATA
1 TATATAATA
* *
57813 TATATAGTT
1 TATATAATA
57822 TATAT-ATA
1 TATATAATA
57830 GTATATAATA
1 -TATATAATA
57840 -ATATAA-A
1 TATATAATA
57847 TATA-AACTA
1 TATATAA-TA
57856 TATA
1 TATA
57860 GTTTATATAT
Statistics
Matches: 187, Mismatches: 21, Indels: 69
0.68 0.08 0.25
Matches are distributed among these distances:
7 14 0.07
8 35 0.19
9 76 0.41
10 16 0.09
11 40 0.21
12 6 0.03
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (9 bp):
TATATAATA
Found at i:57775 original size:13 final size:11
Alignment explanation
Indices: 57693--57934 Score: 97
Period size: 11 Copynumber: 22.5 Consensus size: 11
57683 GTTGTATAGT
57693 TTATATATA-A
1 TTATATATATA
*
57703 TTCATATATAAA
1 TT-ATATATATA
*
57715 TTATATATAAA
1 TTATATATATA
*
57726 ATATATA-AT-
1 TTATATATATA
57735 TTATATATATA
1 TTATATATATA
57746 GTTA-ATATATA
1 -TTATATATATA
*
57757 TAATATATATA
1 TTATATATATA
*
57768 CTTCATATATACA
1 -TT-ATATATATA
* *
57781 CTATATA-GT-
1 TTATATATATA
57790 TTATATATAGT-
1 TTATATATA-TA
*
57801 TTATACATA-A
1 TTATATATATA
*
57811 -TATATATA-G
1 TTATATATATA
57820 TT-TATATATA
1 TTATATATATA
*
57830 GTATATA-ATA
1 TTATATATATA
* *
57840 ATATAAATATA
1 TTATATATATA
*
57851 -AACTATATAGT-
1 TTA-TATATA-TA
57862 TTATATATAGT-
1 TTATATATA-TA
*
57873 TTATATTAATAAA
1 TTATA-T-ATATA
* *
57886 CTATATAGTTTA
1 TTATATA-TATA
57898 -TATATATTATA
1 TTATATA-TATA
57909 TTAT-TATATA
1 TTATATATATA
57919 GTT-TATATATA
1 -TTATATATATA
57930 TTATA
1 TTATA
57935 ATTGTTTCAA
Statistics
Matches: 179, Mismatches: 27, Indels: 51
0.70 0.11 0.20
Matches are distributed among these distances:
9 25 0.14
10 25 0.14
11 97 0.54
12 17 0.09
13 15 0.08
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (11 bp):
TTATATATATA
Found at i:57890 original size:33 final size:30
Alignment explanation
Indices: 57876--57934 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 30
57866 ATATAGTTTA
57876 TATTAATAAACTATATAGTTTATATATATTA
1 TATT-ATAAACTATATAGTTTATATATATTA
57907 TATTAT----TATATAGTTTATATATATTA
1 TATTATAAACTATATAGTTTATATATATTA
57933 TA
1 TA
57935 ATTGTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 22 0.79
30 2 0.07
31 4 0.14
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (30 bp):
TATTATAAACTATATAGTTTATATATATTA
Found at i:57930 original size:72 final size:72
Alignment explanation
Indices: 57737--57918 Score: 217
Period size: 72 Copynumber: 2.5 Consensus size: 72
57727 TATATAATTT
* * * *
57737 ATATATATAGTTAATATATA-TAATATATATACT-TCATATATACACTATATAGTTTATATATAG
1 ATATATATAGTTTATATATAGT-ATATA-ATAATAT-AAATATAAACTATATAGTTTATATATAG
*
57800 TTTATACATA
63 TTTATAAATA
57810 ATATATATAGTTTATATATAGTATATAATAATATAAATATAAACTATATAGTTTATATATAGTTT
1 ATATATATAGTTTATATATAGTATATAATAATATAAATATAAACTATATAGTTTATATATAGTTT
57875 ATATTAATA
66 ATA--AATA
* * *
57884 A-ACTATATAGTTTATATATATTATATTATTATATA
1 ATA-TATATAGTTTATATATAGTATATAATAATATA
57919 GTTTATATAT
Statistics
Matches: 96, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
72 36 0.38
73 26 0.27
74 34 0.35
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (72 bp):
ATATATATAGTTTATATATAGTATATAATAATATAAATATAAACTATATAGTTTATATATAGTTT
ATAAATA
Found at i:57933 original size:9 final size:9
Alignment explanation
Indices: 57693--57934 Score: 91
Period size: 9 Copynumber: 26.6 Consensus size: 9
57683 GTTGTATAGT
57693 TTATATATAA
1 TTATATAT-A
57703 TTCATATATAAA
1 TT-ATATAT--A
57715 TTATATATA
1 TTATATATA
**
57724 AAATATATAA
1 TTATATAT-A
57734 TT-TATATA
1 TTATATATA
57742 -TATAGT-TA
1 TTATA-TATA
*
57750 ATATATATA
1 TTATATATA
*
57759 ATATATATA
1 TTATATATA
57768 CTTCATATATA
1 -TT-ATATATA
*
57779 -CACTATATA
1 TTA-TATATA
57788 GTTTATATATA
1 --TTATATATA
*
57799 GTTTATACATA
1 --TTATATATA
*
57810 ATATATATA
1 TTATATATA
57819 GTT-TATATA
1 -TTATATATA
57828 -TAGTATATA
1 TTA-TATATA
*
57837 ATA-ATATA
1 TTATATATA
* *
57845 -AATATAAA
1 TTATATATA
*
57853 CTATATAGT-
1 TTATATA-TA
57862 TTATATATA
1 TTATATATA
*
57871 GT-T-TATA
1 TTATATATA
*
57878 TTA-ATAAA
1 TTATATATA
*
57886 CTATATAGT-
1 TTATATA-TA
57895 TTATATATA
1 TTATATATA
57904 TTATAT-TA
1 TTATATATA
57912 TTATATAGT-
1 TTATATA-TA
57921 TTATATATA
1 TTATATATA
57930 TTATA
1 TTATA
57935 ATTGTTTCAA
Statistics
Matches: 181, Mismatches: 22, Indels: 59
0.69 0.08 0.23
Matches are distributed among these distances:
7 8 0.04
8 33 0.18
9 92 0.51
10 8 0.04
11 35 0.19
12 5 0.03
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (9 bp):
TTATATATA
Found at i:58970 original size:35 final size:35
Alignment explanation
Indices: 58896--58970 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 35
58886 TAAACTATTA
* *
58896 ATTTTAATTCATTTTAGTATTTAAACTTTTGATTT
1 ATTTTAAATCATTTTAATATTTAAACTTTTGATTT
*
58931 -TTTTAAATCATATTTAATATTT-AATTTTTG-TTT
1 ATTTTAAATCAT-TTTAATATTTAAACTTTTGATTT
58964 CATTTTA
1 -ATTTTA
58971 GTAATCTGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
33 3 0.09
34 17 0.50
35 14 0.41
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.61
Consensus pattern (35 bp):
ATTTTAAATCATTTTAATATTTAAACTTTTGATTT
Found at i:60133 original size:43 final size:43
Alignment explanation
Indices: 60072--60409 Score: 223
Period size: 43 Copynumber: 7.9 Consensus size: 43
60062 TTTTTTAAAC
* * * **
60072 AAAAAATGCCACAATAGGTATTGGTATTTAGCGGCGTTTGTGTG
1 AAAAAA-GCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * * * **
60116 ACAAATGTCGTAATAGGTGTTGATATTTAGCAGTTTTTGTCAG
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
*
60159 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAT
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * * *
60202 AAAAACGCCGCAATAAGTGTTGATATTTAGCGGCATTTTTTAG
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * * * *
60245 ACAAACGCCGCAGTAGGTTTTGATGTTTAGCGGCGTTTTTCTA-
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTC-AG
* * * * * * **
60288 TAAAACGCCGTAGTAGGTGTTGATATTTTGCAGCGTTT-TCCC
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * * * * **
60330 ACAAACGCCGCAGTAGGTGTTGATGTTTTGCAGCGTTT-TCCC
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * * * *
60372 ACAAACGCCGCAGTAGGTTTTGATGTTTTGCGGCGTTT
1 AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTT
60410 TAGCAAAAAC
Statistics
Matches: 245, Mismatches: 47, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
42 76 0.31
43 164 0.67
44 5 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
AAAAAAGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
Found at i:60345 original size:42 final size:42
Alignment explanation
Indices: 60129--60424 Score: 263
Period size: 43 Copynumber: 7.0 Consensus size: 42
60119 AATGTCGTAA
* ** * * *
60129 TAGGTGTTGATATTTAGCAGTTTTTGTCAGAAAAAAGCCGCAA
1 TAGGTGTTGATATTTAGCGGCGTTT-TCACAAAAACGCCGCAG
* *
60172 TAGGTGTTGATATTTAGCGGCGTTTGTCATAAAAACGCCGCAA
1 TAGGTGTTGATATTTAGCGGCGTTT-TCACAAAAACGCCGCAG
* * * * *
60215 TAAGTGTTGATATTTAGCGGCATTTTTTAGACAAACGCCGCAG
1 TAGGTGTTGATATTTAGCGGC-GTTTTCACAAAAACGCCGCAG
* * * *
60258 TAGGTTTTGATGTTTAGCGGCGTTTTTCTA-TAAAACGCCGTAG
1 TAGGTGTTGATATTTAGCGGCG-TTTTC-ACAAAAACGCCGCAG
* * * *
60301 TAGGTGTTGATATTTTGCAGCGTTTTCCCACAAACGCCGCAG
1 TAGGTGTTGATATTTAGCGGCGTTTTCACAAAAACGCCGCAG
* * * * *
60343 TAGGTGTTGATGTTTTGCAGCGTTTTCCCACAAACGCCGCAG
1 TAGGTGTTGATATTTAGCGGCGTTTTCACAAAAACGCCGCAG
* * *
60385 TAGGTTTTGATGTTTTGCGGCGTTTT-AGCAAAAACGCCGC
1 TAGGTGTTGATATTTAGCGGCGTTTTCA-CAAAAACGCCGC
60425 TAAATGTATG
Statistics
Matches: 216, Mismatches: 32, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
42 91 0.42
43 121 0.56
44 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TAGGTGTTGATATTTAGCGGCGTTTTCACAAAAACGCCGCAG
Found at i:62904 original size:39 final size:36
Alignment explanation
Indices: 62820--62905 Score: 163
Period size: 36 Copynumber: 2.4 Consensus size: 36
62810 AACCTTTCGT
*
62820 TTTCCATAATAATTTAACTCAATAATGTCCGTAAGA
1 TTTCCATAATAATCTAACTCAATAATGTCCGTAAGA
62856 TTTCCATAATAATCTAACTCAATAATGTCCGTAAGA
1 TTTCCATAATAATCTAACTCAATAATGTCCGTAAGA
62892 TTTCCATAATAATC
1 TTTCCATAATAATC
62906 GACCTCTCTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (36 bp):
TTTCCATAATAATCTAACTCAATAATGTCCGTAAGA
Found at i:70778 original size:41 final size:41
Alignment explanation
Indices: 70733--70840 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
70723 ATGACAAAAC
* * * *
70733 TATTACGGTATTTTTTTATAAACGCCGCTAAAGAACATGGA
1 TATTACGGCATTTATTTACAAACACCGCTAAAGAACATGGA
* * * *
70774 TATTACGACGTTTATTTACAAACATCGCTAAAGTACATGGA
1 TATTACGGCATTTATTTACAAACACCGCTAAAGAACATGGA
* *
70815 TATTACGGCGTTTGA-TCACAAACACC
1 TATTACGGCATTT-ATTTACAAACACC
70841 AGATAAGTAC
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 54 0.98
42 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (41 bp):
TATTACGGCATTTATTTACAAACACCGCTAAAGAACATGGA
Found at i:70849 original size:41 final size:40
Alignment explanation
Indices: 70752--70878 Score: 112
Period size: 41 Copynumber: 3.1 Consensus size: 40
70742 ATTTTTTTAT
* * * * *
70752 AAACGCCGCTAAAGAACATGGATATTACGACGTTTATTTAC
1 AAACACCGATAAAGTACATGGATATTACGGCGTTTA-TCAC
* *
70793 AAACATCGCTAAAGTACATGGATATTACGGCGTTTGATCAC
1 AAACACCGATAAAGTACATGGATATTACGGCGTTT-ATCAC
* * * *
70834 AAACACCAGAT-AAGTACAAGGCTATTGCGGCGTTTTTTCAC
1 AAACACC-GATAAAGTACATGGATATTACGGCG-TTTATCAC
70875 AAAC
1 AAAC
70879 GCCACTAAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 66 0.92
42 6 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (40 bp):
AAACACCGATAAAGTACATGGATATTACGGCGTTTATCAC
Found at i:72063 original size:22 final size:22
Alignment explanation
Indices: 72038--72083 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
72028 ACGTTTTCAT
*
72038 AAACTATTATTTTCCTATTAGA
1 AAACAATTATTTTCCTATTAGA
* *
72060 AAACAATTATTTTTCTATTCGA
1 AAACAATTATTTTCCTATTAGA
72082 AA
1 AA
72084 GCAAAAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (22 bp):
AAACAATTATTTTCCTATTAGA
Found at i:72706 original size:83 final size:82
Alignment explanation
Indices: 72509--72822 Score: 242
Period size: 83 Copynumber: 3.8 Consensus size: 82
72499 TTATAAAAAT
* ** * *
72509 GACACGATAAACAACA-TATTGCGGCGTTTGTGGGACAAACGCCACTAAATTA-TTACTCTATTG
1 GACACTATAAACAACACTATTGCGGCGTTTGT-ATATAAACGCCGCTAAATTACTT-CTCTATTG
72572 CGGT-ACTTTTTT-ACACAAAC
64 C-GTCA-TTTTTTGA-ACAAAC
* * * *** * * *
72592 GCCACTATAAACAACCCTTTTGCGATATTTGTTTGATAAACGCCGCTAAATTACTTCTCAATAGC
1 GACACTATAAACAACACTATTGCGGCGTTTGTAT-ATAAACGCCGCTAAATTACTTCTCTATTGC
72657 GTCATTTTTTGAACAAAC
65 GTCATTTTTTGAACAAAC
* * ** * **
72675 GACACTATAAACAACACTATCGCGGCGTTTGTATAAAAATTCTGCTAAATTACCACTCTATTGCG
1 GACACTATAAACAACACTATTGCGGCGTTTGTATATAAACGCCGCTAAATTACTTCTCTATTGCG
* * * *
72740 GCGTTTGTTGAAAAAAC
66 TCATTTTTTGAACAAAC
* * * * **
72757 GCCACTATAAATAACTCTATTACGGCGTTTG-AGCTATAAACGCCGCTAAATTACCACTCTATTG
1 GACACTATAAACAACACTATTGCGGCGTTTGTA--TATAAACGCCGCTAAATTACTTCTCTATTG
72821 CG
64 CG
72823 GCGTTTGTTT
Statistics
Matches: 182, Mismatches: 42, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
81 1 0.01
82 62 0.34
83 81 0.45
84 36 0.20
85 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (82 bp):
GACACTATAAACAACACTATTGCGGCGTTTGTATATAAACGCCGCTAAATTACTTCTCTATTGCG
TCATTTTTTGAACAAAC
Found at i:72763 original size:82 final size:82
Alignment explanation
Indices: 72629--72836 Score: 229
Period size: 82 Copynumber: 2.5 Consensus size: 82
72619 TTTGTTTGAT
** * * * * * *
72629 AAACGCCGCTAAATTACTTCTCAATAGCGTCATTTTTTGAACAAACGACACTATAAACAACACTA
1 AAACGCCGCTAAATTACCACTCTATTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTA
*
72694 TCGCGGCGTTTGTA-TAA
66 TCACGGCGTTTG-ACTAA
** * * * *
72711 AAATTCTGCTAAATTACCACTCTATTGCGGCGTTTGTTGAAAAAACGCCACTATAAATAACTCTA
1 AAACGCCGCTAAATTACCACTCTATTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTA
* *
72776 TTACGGCGTTTGAGCTAT
66 TCACGGCGTTTGA-CTAA
*
72794 AAACGCCGCTAAATTACCACTCTATTGCGGCGTTTGTTTAAAA
1 AAACGCCGCTAAATTACCACTCTATTGCGGCGTTTGTTGAAAA
72837 CAATGCTGCT
Statistics
Matches: 103, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
81 1 0.01
82 61 0.59
83 41 0.40
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (82 bp):
AAACGCCGCTAAATTACCACTCTATTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTA
TCACGGCGTTTGACTAA
Found at i:72828 original size:42 final size:42
Alignment explanation
Indices: 72691--72830 Score: 135
Period size: 41 Copynumber: 3.4 Consensus size: 42
72681 ATAAACAACA
* * ** *
72691 CTATCGCGGCGTTTGTA-TAAAAATTCTGCTAAATTACCACT
1 CTATTGCGGCGTTTGTAGAAAAAACGCCGCTAAATTACCACT
* * *
72732 CTATTGCGGCGTTTGTTGAAAAAACGCCACTATAAATA--ACT
1 CTATTGCGGCGTTTGTAGAAAAAACGCCGCTA-AATTACCACT
* * *
72773 CTATTACGGCGTTTG-AGCTATAAACGCCGCTAAATTACCACT
1 CTATTGCGGCGTTTGTAG-AAAAAACGCCGCTAAATTACCACT
72815 CTATTGCGGCGTTTGT
1 CTATTGCGGCGTTTGT
72831 TTAAAACAAT
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
40 5 0.06
41 43 0.55
42 26 0.33
43 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (42 bp):
CTATTGCGGCGTTTGTAGAAAAAACGCCGCTAAATTACCACT
Found at i:72828 original size:83 final size:82
Alignment explanation
Indices: 72488--72836 Score: 233
Period size: 83 Copynumber: 4.2 Consensus size: 82
72478 GTACATGTTT
* * ** ** *
72488 TTGCGGCGTTT-TT-ATAAAAATGACACGATAAACAACA-TATTGCGGCGTTTGTGGGACAAACG
1 TTGCGGCGTTTGTTGA-AAAAACGACACTATAAACAACACTATCACGGCGTTTGT-ATATAAACG
* **
72550 CCACTAAATTATTACTCTA
64 CCGCTAAATTACCACTCTA
* * * * * ** *** *
72569 TTGCGGTAC-TTT-TTTACACAAACGCCACTATAAACAACCCTTTTGCGATATTTGTTTGATAAA
1 TTGCGG--CGTTTGTTGA-AAAAACGACACTATAAACAACACTATCACGGCGTTTGTAT-ATAAA
** *
72632 CGCCGCTAAATTACTTCTCAA
62 CGCCGCTAAATTACCACTCTA
* * * * * * * ** *
72653 TAGCGTCATTTTTTGAACAAACGACACTATAAACAACACTATCGCGGCGTTTGTATAAAAATTCT
1 TTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTATCACGGCGTTTGTATATAAACGCC
72718 GCTAAATTACCACTCTA
66 GCTAAATTACCACTCTA
* * * *
72735 TTGCGGCGTTTGTTGAAAAAACGCCACTATAAATAACTCTATTACGGCGTTTG-AGCTATAAACG
1 TTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTATCACGGCGTTTGTA--TATAAACG
72799 CCGCTAAATTACCACTCTA
64 CCGCTAAATTACCACTCTA
*
72818 TTGCGGCGTTTGTTTAAAA
1 TTGCGGCGTTTGTTGAAAA
72837 CAATGCTGCT
Statistics
Matches: 209, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
81 7 0.03
82 68 0.33
83 95 0.45
84 39 0.19
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (82 bp):
TTGCGGCGTTTGTTGAAAAAACGACACTATAAACAACACTATCACGGCGTTTGTATATAAACGCC
GCTAAATTACCACTCTA
Found at i:74025 original size:11 final size:11
Alignment explanation
Indices: 74009--74056 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
73999 TCCTATAAAT
74009 ACCACACCCAA
1 ACCACACCCAA
74020 ACCACAACCTCCAA
1 ACCAC-A-C-CCAA
*
74034 ACCACACTCAA
1 ACCACACCCAA
*
74045 ACCACACTCAA
1 ACCACACCCAA
74056 A
1 A
74057 TCTCAAATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 20 0.61
12 2 0.06
13 2 0.06
14 9 0.27
ACGTcount: A:0.46, C:0.48, G:0.00, T:0.06
Consensus pattern (11 bp):
ACCACACCCAA
Found at i:79052 original size:12 final size:12
Alignment explanation
Indices: 79035--79144 Score: 84
Period size: 12 Copynumber: 8.9 Consensus size: 12
79025 TATATTATAG
79035 ATATTAATTTTA
1 ATATTAATTTTA
79047 ATATTAATTTATTA
1 ATATTAA-TT-TTA
* *
79061 A-A-TAAATTAA
1 ATATTAATTTTA
79071 ATATTAATTTTTA
1 ATATTAA-TTTTA
*
79084 ATATTATATTATA
1 ATATTA-ATTTTA
79097 GATATTAATTTTA
1 -ATATTAATTTTA
79110 ATATTAAAATTTTA
1 ATATT--AATTTTA
* *
79124 A-A-TAAATTAA
1 ATATTAATTTTA
79134 ATATTAATTTT
1 ATATTAATTTT
79145 TTAATATCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
10 9 0.12
11 3 0.04
12 24 0.31
13 22 0.29
14 19 0.25
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (12 bp):
ATATTAATTTTA
Found at i:79059 original size:20 final size:20
Alignment explanation
Indices: 79018--79144 Score: 70
Period size: 20 Copynumber: 6.4 Consensus size: 20
79008 GGTTTTATAT
79018 TTAATTTT-ATATTATAGATA
1 TTAATTTTAATATTA-AGATA
**
79038 TTAATTTTAATATTAATTTA
1 TTAATTTTAATATTAAGATA
* * *
79058 TTAAATAAATTAAATATTAA-TTT
1 TT-AAT---TTTAATATTAAGATA
*
79081 TTAATATT-ATATTATAGATA
1 TTAATTTTAATATTA-AGATA
* *
79101 TTAATTTTAATATTAAAATT
1 TTAATTTTAATATTAAGATA
*
79121 TTAA--ATAA-ATTAA-ATA
1 TTAATTTTAATATTAAGATA
79137 TTAATTTT
1 TTAATTTT
79145 TTAATATCAA
Statistics
Matches: 83, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
16 6 0.07
17 5 0.06
18 10 0.12
19 2 0.02
20 28 0.34
21 15 0.18
22 3 0.04
23 4 0.05
24 10 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTAATTTTAATATTAAGATA
Found at i:79101 original size:14 final size:12
Alignment explanation
Indices: 79028--79142 Score: 76
Period size: 13 Copynumber: 9.2 Consensus size: 12
79018 TTAATTTTAT
79028 ATTATAGATATTA
1 ATTATA-ATATTA
*
79041 ATTTTAATATTA
1 ATTATAATATTA
*
79053 ATTTATTAA-ATAA
1 A-TTA-TAATATTA
79066 ATTA-AATATTA
1 ATTATAATATTA
*
79077 ATTTTTAATATTA
1 A-TTATAATATTA
79090 TATTATAGATATTA
1 -ATTATA-ATATTA
*
79104 ATTTTAATATTAAA
1 ATTATAATATT--A
* *
79118 ATTTTAA-ATAA
1 ATTATAATATTA
79129 ATTA-AATATTA
1 ATTATAATATTA
79140 ATT
1 ATT
79143 TTTTAATATC
Statistics
Matches: 82, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
10 4 0.05
11 14 0.17
12 17 0.21
13 29 0.35
14 18 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (12 bp):
ATTATAATATTA
Found at i:79116 original size:63 final size:64
Alignment explanation
Indices: 79017--79151 Score: 229
Period size: 63 Copynumber: 2.1 Consensus size: 64
79007 AGGTTTTATA
* *
79017 TTTAATTTTATATTATAGATATTAATTTTAATATT-AATTTATTAAATAAATTAAATATTAA-TT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAAAATT-TTAAATAAATTAAATATTAATTT
79080 TTTAATATTATATTATAGATATTAATTTTAATATTAAAATTTTAAATAAATTAAATATTAATTT
1 TTTAATATTATATTATAGATATTAATTTTAATATTAAAATTTTAAATAAATTAAATATTAATTT
79144 TTTAATAT
1 TTTAATAT
79152 CAACTTGTAG
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
63 54 0.79
64 14 0.21
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (64 bp):
TTTAATATTATATTATAGATATTAATTTTAATATTAAAATTTTAAATAAATTAAATATTAATTT
Found at i:79812 original size:31 final size:31
Alignment explanation
Indices: 79774--79835 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
79764 ACATTCATAA
79774 GCTCCAGATTTGATTCCACGATTCACGCAAT
1 GCTCCAGATTTGATTCCACGATTCACGCAAT
*
79805 GCTCCAGATTTGATTCCACGTTTCACGCAAT
1 GCTCCAGATTTGATTCCACGATTCACGCAAT
79836 CTTATGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (31 bp):
GCTCCAGATTTGATTCCACGATTCACGCAAT
Found at i:81728 original size:103 final size:103
Alignment explanation
Indices: 81544--81761 Score: 373
Period size: 103 Copynumber: 2.1 Consensus size: 103
81534 GTCGAGGGTC
* *
81544 TATGTGGCCCTTCGGGGCATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
81609 TTGATCCTTGGCATATGTATATGATTCTTAAGAAATGA
66 TTGATCCCTAGCATATGTATATGATACTTAAGAAATGA
81647 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* *
81712 TTGATCCCTAGTATATGTATATGATACTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATACTTAAGAAATGA
81750 TATGTGGTCCTT
1 TATGTGGTCCTT
81762 ATGGACATTA
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 108 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATACTTAAGAAATGA
Found at i:81827 original size:47 final size:47
Alignment explanation
Indices: 81768--81887 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
81758 CCTTATGGAC
81768 ATTATTATATGGCACTACGGTGCAATTCTACCCGGCACTCCGGTGCA
1 ATTATTATATGGCACTACGGTGCAATTCTACCCGGCACTCCGGTGCA
* *
81815 ATTATTAAATGGCACTACGGTGCAATTCTACGCGGCACTCCGGTGCA
1 ATTATTATATGGCACTACGGTGCAATTCTACCCGGCACTCCGGTGCA
* *
81862 ATTA-TATGTGGCACTTCGGTGCAATT
1 ATTATTATATGGCACTACGGTGCAATT
81888 ATATGAGCTG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 19 0.28
47 49 0.72
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (47 bp):
ATTATTATATGGCACTACGGTGCAATTCTACCCGGCACTCCGGTGCA
Found at i:81888 original size:23 final size:23
Alignment explanation
Indices: 81768--81892 Score: 115
Period size: 23 Copynumber: 5.3 Consensus size: 23
81758 CCTTATGGAC
*
81768 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* *** *
81792 ATTCTACCCGGCACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
**
81815 ATTATTAAATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
81839 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
81862 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
81885 ATTATATG
1 ATTATATG
81893 AGCTGTGGTG
Statistics
Matches: 81, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
23 60 0.74
24 21 0.26
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:87677 original size:103 final size:103
Alignment explanation
Indices: 87452--87669 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
87442 GTCGAGGGTC
87452 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* *
87517 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
87555 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
87620 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
87658 TATGTGGTCCTT
1 TATGTGGTCCTT
87670 ATGGACATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:87730 original size:47 final size:47
Alignment explanation
Indices: 87676--87795 Score: 188
Period size: 47 Copynumber: 2.6 Consensus size: 47
87666 CCTTATGGAC
*
87676 ATTATTATATGGCACTACGGTGCAATTCTACGCGGCACTCCAGTGCA
1 ATTATTATATGGCACTACGGTGCAATTCTACGCGGAACTCCAGTGCA
*
87723 ATTATTATATGGCACTACGGTGCAATTCTACGCGGAACTCCGGTGCA
1 ATTATTATATGGCACTACGGTGCAATTCTACGCGGAACTCCAGTGCA
* * *
87770 ATTA-TATGTGGCACTTCGATGCAATT
1 ATTATTATATGGCACTACGGTGCAATT
87796 ATATGAGCTG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 19 0.28
47 49 0.72
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (47 bp):
ATTATTATATGGCACTACGGTGCAATTCTACGCGGAACTCCAGTGCA
Found at i:87796 original size:23 final size:23
Alignment explanation
Indices: 87676--87800 Score: 106
Period size: 23 Copynumber: 5.3 Consensus size: 23
87666 CCTTATGGAC
*
87676 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * * *
87700 ATTCTACGCGGCACTCCAGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
87723 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * * *
87747 ATTCTACGCGGAACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
* *
87770 ATTATATGTGGCACTTCGATGCA
1 ATTATATGTGGCACTACGGTGCA
87793 ATTATATG
1 ATTATATG
87801 AGCTGTGGTG
Statistics
Matches: 76, Mismatches: 24, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
23 56 0.74
24 20 0.26
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:88946 original size:31 final size:31
Alignment explanation
Indices: 88909--88969 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
88899 GTAGTTGTAT
* *
88909 GAATTATTTAAATTTCAGTATTGTAAAACTA
1 GAATTATTTAAATCTCAGTATTGCAAAACTA
88940 GAATTATTTAAATCTCAGTATTGCAAAACT
1 GAATTATTTAAATCTCAGTATTGCAAAACT
88970 CTTTTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (31 bp):
GAATTATTTAAATCTCAGTATTGCAAAACTA
Found at i:89242 original size:14 final size:13
Alignment explanation
Indices: 89207--89256 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
89197 TTTACAACAG
89207 CAAAAAATTA-TA
1 CAAAAAATTAGTA
89219 CAAAATAATTAGTA
1 CAAAA-AATTAGTA
*
89233 CAATAAAATTTGTA
1 CAA-AAAATTAGTA
*
89247 CAAATAATTA
1 CAAAAAATTA
89257 AATATAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 5 0.16
13 10 0.31
14 15 0.47
15 2 0.06
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.30
Consensus pattern (13 bp):
CAAAAAATTAGTA
Found at i:92116 original size:20 final size:20
Alignment explanation
Indices: 92089--92139 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
92079 TGATACCCGC
*
92089 GATATCGATATCAAGCATCTT
1 GATATCGATACCAAGCAT-TT
*
92110 G-TATCGATACCGAGCATTT
1 GATATCGATACCAAGCATTT
92129 GATATCGATAC
1 GATATCGATAC
92140 TACAACCCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 23 0.85
21 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (20 bp):
GATATCGATACCAAGCATTT
Found at i:93543 original size:28 final size:29
Alignment explanation
Indices: 93491--93546 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
93481 CTTTAGGCGC
*
93491 TTAAAGAATTTTTCATTAAAAATAGGTGG
1 TTAAAGAATTTTTCACTAAAAATAGGTGG
* *
93520 TTAAAGAA-TTTTCGCTAAACATAGGTG
1 TTAAAGAATTTTTCACTAAAAATAGGTG
93547 TCTAACGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (29 bp):
TTAAAGAATTTTTCACTAAAAATAGGTGG
Found at i:93598 original size:31 final size:31
Alignment explanation
Indices: 93541--93599 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
93531 TCGCTAAACA
*
93541 TAGGTGTCTAACGTTTTATCCGTTACACATT
1 TAGGTGTCTAACGTTTTATCCATTACACATT
* *
93572 TAGGTGTCTAACGTTTTCTCTATTACAC
1 TAGGTGTCTAACGTTTTATCCATTACAC
93600 TTATAGGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (31 bp):
TAGGTGTCTAACGTTTTATCCATTACACATT
Found at i:93837 original size:2 final size:2
Alignment explanation
Indices: 93830--93859 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93820 ATGTCGTGTT
93830 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93860 ATTTATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:96022 original size:30 final size:31
Alignment explanation
Indices: 95988--96054 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
95978 TACCAAATTA
*
95988 GTCACTAGTACTATCGATTTGTAAC-AAATG
1 GTCACTAATACTATCGATTTGTAACAAAATG
**
96018 GTCACTAATGTTATCGATTTGTAACAAAATG
1 GTCACTAATACTATCGATTTGTAACAAAATG
*
96049 ATCACT
1 GTCACT
96055 CCACCATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (31 bp):
GTCACTAATACTATCGATTTGTAACAAAATG
Done.