Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004326.1 Hibiscus syriacus cultivar Beakdansim tig00009484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97770

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4046--4087
14
2.9
15
75
10
52
38
0
0
61
0.96
4046--4103
29
2.1
27
81
12
64
43
0
3
53
1.17
6084--6170
30
3.0
30
88
3
124
39
4
25
31
1.76
6389--6456
23
3.0
23
78
8
68
22
25
25
27
1.99
12904--12972
30
2.3
30
87
0
93
39
2
21
36
1.69
13179--13246
23
3.0
23
93
0
109
22
26
26
25
2.00
13897--13977
40
2.0
40
92
0
135
48
12
6
33
1.66
14982--15032
19
2.7
19
96
0
93
21
41
15
21
1.90
15674--15708
18
1.9
18
94
0
61
20
20
34
25
1.96
16094--16144
20
2.7
20
93
6
88
21
0
25
52
1.47
17936--17973
16
2.3
16
83
16
51
39
0
5
55
1.23
30361--30401
21
2.0
21
100
0
82
29
9
24
36
1.87
51616--51652
18
2.0
19
89
5
58
67
0
8
24
1.17
52465--52545
10
7.5
10
70
20
56
60
19
8
11
1.56
52478--52508
14
2.2
14
94
0
53
58
25
12
3
1.50
52662--52703
9
4.3
10
80
14
52
59
9
2
28
1.41
52794--52853
14
4.6
14
82
16
74
58
13
13
15
1.64
52795--52846
24
2.2
24
92
0
86
59
11
13
15
1.61
52803--52832
10
3.0
10
95
0
51
60
10
13
16
1.59
53603--53706
33
3.1
32
82
6
100
34
0
3
61
1.14
53647--53703
18
3.3
18
73
14
57
43
0
1
54
1.10
56592--56620
13
2.1
14
93
6
51
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60811--60835
11
2.3
11
100
0
50
48
16
0
36
1.46
60898--60936
17
2.4
17
91
4
62
43
2
5
48
1.38
62092--62135
15
2.9
15
86
10
54
47
2
2
47
1.27
63209--63266
23
2.6
21
77
20
55
46
0
5
48
1.24
63210--63261
25
2.2
23
83
10
61
44
0
3
51
1.19
63901--63930
14
2.1
15
93
6
53
46
0
0
53
1.00
76031--76066
2
18.0
2
100
0
72
50
0
0
50
1.00
82769--82812
19
2.3
19
92
7
72
34
0
43
22
1.54
93260--93320
3
20.0
3
86
3
68
40
0
0
59
0.98
94396--94437
21
2.0
21
85
4
57
38
4
2
54
1.34
94612--94644
15
2.3
15
89
5
50
42
0
0
57
0.98
94953--94999
24
1.9
24
86
4
67
57
2
2
38
1.23
97040--97078
15
2.7
15
88
4
53
20
15
12
51
1.76

Tables:   1

The End!