genome.fa.s4327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004327.1 Hibiscus syriacus cultivar Beakdansim tig00009486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139079

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40--577	111	4.6	120	86	9	567	25	20	15	38	1.92
281--591	110	2.8	110	89	8	447	25	20	16	37	1.93
162--590	226	1.9	225	82	11	547	25	20	16	37	1.93
606--780	75	2.3	73	88	3	242	33	22	20	23	1.97
3983--4205	114	2.0	113	93	0	383	31	20	14	33	1.93
12937--13027	3	32.0	3	75	10	57	72	1	0	26	0.91
12943--12986	15	2.9	15	89	0	70	84	0	0	15	0.63
12941--12988	21	2.3	21	85	10	71	81	0	0	18	0.70
12941--12986	24	1.9	24	90	0	74	82	0	0	17	0.67
12977--13026	19	2.6	19	83	0	64	68	2	0	30	1.01
12996--13040	22	2.0	22	83	8	56	71	2	2	24	1.09
15109--15202	37	2.5	37	83	8	127	36	41	7	14	1.75
15587--15619	14	2.4	14	85	5	50	72	0	0	27	0.85
15586--15620	13	2.7	13	87	12	54	68	0	0	31	0.90
18642--18671	16	1.9	15	93	6	51	13	26	13	46	1.80
19650--19681	3	10.7	3	100	0	64	68	0	31	0	0.90
31702--31749	23	2.2	22	92	7	80	47	10	0	41	1.37
32068--32120	3	17.7	3	100	0	106	67	0	0	32	0.91
33164--33200	18	2.0	18	89	5	56	62	2	0	35	1.10
33812--33873	31	2.0	31	90	0	97	37	9	25	27	1.87
40820--40859	2	20.0	2	100	0	80	50	0	0	50	1.00
44834--44945	60	1.9	58	81	3	134	41	15	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47313--47347	17	2.1	17	100	0	70	34	11	28	25	1.91
50708--50745	20	1.9	20	89	10	60	44	7	15	31	1.75
51777--51831	24	2.2	26	93	6	96	38	1	0	60	1.08
51793--51841	24	2.0	24	88	4	71	46	0	0	53	1.00
52350--52395	23	2.0	23	86	0	65	50	21	23	4	1.67
62923--63005	29	2.8	29	87	1	121	45	9	12	32	1.74
66370--66399	15	2.0	15	93	0	51	20	0	23	56	1.42
67689--67771	29	2.8	29	88	1	130	44	9	13	32	1.76
69181--69214	18	1.9	18	88	5	52	14	26	32	26	1.95
70777--70873	29	3.3	29	72	17	101	15	5	21	57	1.57
70866--70947	23	3.4	24	76	8	87	24	13	17	45	1.84
71024--71067	22	2.0	22	86	8	63	9	6	22	61	1.50
78461--78525	30	2.2	31	89	10	100	27	6	4	61	1.40
80317--80390	37	2.0	37	84	5	96	47	1	6	44	1.38
81143--81181	20	2.0	20	84	0	51	53	0	7	38	1.30
81910--81994	2	42.5	2	100	0	170	49	0	50	0	1.00
86612--86667	29	1.9	29	92	0	94	33	14	8	42	1.77
90644--90729	26	3.3	26	98	0	163	33	13	3	48	1.60
92150--92177	2	14.0	2	100	0	56	50	50	0	0	1.00
92574--92649	20	3.9	19	81	6	91	25	30	22	22	1.99
92615--92658	20	2.2	20	87	0	61	25	34	20	20	1.97
95262--95298	17	2.1	19	90	10	60	56	5	2	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101948--101995	24	2.0	24	84	8	62	35	25	37	2	1.68
101957--102048	24	3.7	24	68	16	62	36	23	33	5	1.78
117820--117845	2	13.0	2	100	0	52	50	0	0	50	1.00
119362--119438	27	3.0	27	74	14	81	50	0	2	46	1.15
119383--119446	23	2.7	23	72	11	58	46	0	1	51	1.10
120346--120384	18	2.2	18	85	0	51	64	0	0	35	0.94
120387--120447	27	2.3	26	83	16	72	52	1	1	44	1.20
122659--122810	60	2.5	59	80	9	141	38	6	21	32	1.79
128326--128364	3	13.0	3	100	0	78	66	0	0	33	0.92
130128--130311	51	3.6	51	90	5	291	22	13	17	46	1.82
134326--134625	145	2.1	144	84	3	379	22	23	21	33	1.97
135342--135444	40	2.6	40	82	3	118	32	19	27	21	1.97
135495--135719	121	1.9	121	85	1	317	24	18	24	32	1.97
136055--136181	43	3.0	43	88	4	168	18	19	32	29	1.96
135870--136256	206	1.9	197	85	9	529	20	18	28	32	1.97
136685--136768	32	2.8	30	83	8	91	30	22	16	29	1.96

Tables:   1

The End!