Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004328.1 Hibiscus syriacus cultivar Beakdansim tig00009487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80910

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4968--5023
22
2.5
22
85
5
76
21
25
16
37
1.93
5715--5772
23
2.5
23
86
5
73
34
22
20
22
1.97
10541--10589
20
2.5
20
86
0
62
38
16
24
20
1.92
11076--11110
17
2.2
17
90
10
56
40
5
25
28
1.78
11181--11227
2
23.5
2
100
0
94
48
0
0
51
1.00
11263--11353
23
4.0
23
88
0
128
23
21
25
29
1.99
11342--11380
20
1.9
21
85
15
55
25
17
25
30
1.97
17491--17530
21
1.9
21
90
10
64
47
5
25
22
1.71
20759--20820
26
2.4
26
100
0
124
41
12
3
41
1.59
21407--21484
31
2.5
31
97
2
149
66
16
0
16
1.25
21663--21697
11
3.1
11
88
8
52
34
2
0
62
1.10
22026--22070
20
2.3
20
88
3
65
51
0
0
48
1.00
25023--25098
29
2.6
29
93
0
134
43
10
14
31
1.79
29779--29854
29
2.6
29
93
0
134
43
10
14
31
1.79
34379--34419
18
2.4
16
84
8
55
65
4
17
12
1.42
36757--36809
20
2.6
21
79
8
65
30
24
16
28
1.97
37779--37915
66
2.1
66
92
0
229
34
12
17
35
1.87
47485--47529
23
2.0
23
86
0
63
37
26
15
20
1.92
57591--57633
18
2.4
18
96
0
77
39
11
32
16
1.84
58147--58968
199
4.1
199
85
4
1068
33
13
13
38
1.85
58136--58938
395
2.0
398
87
2
1168
33
13
13
39
1.84
58851--59251
145
2.8
145
85
3
529
37
14
14
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59335--59374
15
2.7
15
92
3
64
37
12
15
35
1.85
61099--61281
92
2.0
92
90
2
287
39
23
8
27
1.84
66959--67001
20
2.2
20
82
0
50
32
11
11
44
1.77
66676--67366
198
3.5
194
82
5
820
32
15
13
39
1.85
67514--67562
26
1.9
25
83
4
62
40
10
12
36
1.77
70517--70552
14
2.6
14
95
0
63
41
19
13
25
1.88
71791--71916
47
2.8
45
88
5
182
39
7
23
29
1.83
74721--74756
3
12.0
3
100
0
72
66
0
0
33
0.92
79054--79164
45
2.5
43
85
7
134
38
9
20
31
1.84

Tables:   1

The End!