Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004331.1 Hibiscus syriacus cultivar Beakdansim tig00009498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66013

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1446--1517
21
3.5
20
83
11
92
30
18
30
20
1.96
3590--3628
20
2.0
20
94
0
69
43
20
17
17
1.88
3593--3636
20
2.2
20
87
0
61
43
22
18
15
1.88
3643--3699
18
3.0
20
87
10
91
14
14
19
52
1.74
7857--7895
19
2.1
19
100
0
78
33
20
30
15
1.94
10032--10077
21
2.2
21
88
3
67
67
2
6
23
1.25
13738--13816
36
2.2
37
88
8
119
49
8
10
31
1.67
16535--16732
83
2.4
80
77
5
200
33
13
14
38
1.85
20264--20305
21
2.0
21
86
9
59
50
2
11
35
1.52
24102--24161
20
3.0
19
80
7
66
25
36
26
11
1.90
26387--26436
25
2.0
25
96
0
91
42
0
34
24
1.55
26388--26443
25
2.5
22
82
11
60
39
0
41
19
1.52
29363--29444
33
2.5
33
89
0
119
19
23
17
40
1.91
29799--29884
25
3.8
24
87
9
119
15
9
19
55
1.66
31246--31270
13
1.9
13
100
0
50
80
0
0
20
0.72
34753--34781
2
14.5
2
100
0
58
48
0
0
51
1.00
35905--35952
14
3.4
14
75
11
53
29
8
20
41
1.81
35904--35962
28
2.1
28
93
0
100
28
8
16
45
1.77
40818--40842
6
4.2
6
100
0
50
20
16
64
0
1.30
40906--40949
13
3.5
13
87
6
63
18
50
15
15
1.79
40915--40950
12
2.9
12
91
4
54
19
52
16
11
1.73
41055--41109
24
2.3
24
87
0
74
23
47
16
12
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41072--41109
12
3.2
12
100
0
76
23
50
18
7
1.73
43087--43140
25
2.2
25
93
0
90
5
14
16
62
1.49
46851--46911
20
3.0
20
81
11
63
24
4
3
67
1.26
46862--46911
19
2.5
20
81
12
59
24
4
2
70
1.15
47616--47652
16
2.3
16
95
0
65
62
0
5
32
1.18
52229--52299
35
2.0
35
100
0
142
40
16
2
39
1.64
52457--52503
15
3.1
16
77
20
55
42
0
23
34
1.54
52764--52874
55
2.0
55
91
1
179
26
13
27
32
1.94
64696--64775
3
26.7
3
100
0
160
0
32
0
67
0.91

Tables:   1

The End!