Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004332.1 Hibiscus syriacus cultivar Beakdansim tig00009499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82127

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--53
2
16.0
2
93
6
55
48
0
51
0
1.00
7409--7455
22
2.1
22
100
0
94
36
4
12
46
1.62
7414--7462
22
2.2
22
92
0
80
36
4
12
46
1.60
10718--10804
35
2.5
35
80
12
99
57
6
6
28
1.51
10799--10823
13
1.9
13
100
0
50
72
8
0
20
1.10
10799--10883
34
2.5
32
83
10
116
65
12
1
20
1.32
10904--10946
13
3.4
13
80
3
52
69
9
4
16
1.31
13088--13157
13
5.5
12
74
17
61
65
1
1
31
1.10
13086--13157
23
2.9
23
74
21
65
66
1
1
30
1.08
13089--13144
28
2.0
29
89
3
87
66
1
1
30
1.12
13130--13163
17
1.9
18
94
5
61
64
2
0
32
1.08
18499--18560
11
5.4
12
75
9
58
24
16
22
37
1.94
18499--18590
23
4.0
23
76
6
71
28
19
19
32
1.96
26385--26480
30
3.2
30
69
8
88
34
26
5
34
1.79
26380--26508
59
2.2
59
94
0
222
34
25
5
34
1.79
26415--26508
29
3.2
29
68
14
84
35
25
5
34
1.79
32096--32158
23
2.7
23
85
0
81
36
17
15
30
1.91
33037--33119
40
2.1
40
97
0
157
44
7
14
33
1.73
36046--36082
14
2.6
14
95
0
65
51
0
0
48
1.00
36635--36683
24
2.0
24
88
7
73
44
0
0
55
0.99
39701--39736
17
2.1
18
89
5
56
33
11
0
55
1.35
40616--40646
3
10.3
3
92
0
53
29
0
0
70
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49145--49178
15
2.1
17
89
10
54
5
17
23
52
1.66
50043--50094
20
2.7
19
82
5
68
51
5
5
36
1.50
50215--50314
33
3.0
33
94
1
173
17
19
15
49
1.80
52492--52563
36
2.0
36
86
5
101
50
0
4
45
1.21
52543--52591
18
2.8
17
78
6
53
55
2
2
40
1.23
55623--55662
20
2.1
20
86
9
57
40
0
10
50
1.36
63621--63688
32
2.1
32
100
0
136
47
0
11
41
1.40
73742--73855
60
1.9
60
85
3
158
33
14
14
36
1.88
73743--73873
60
2.2
60
80
9
151
32
15
15
37
1.88
74419--74443
3
8.3
3
100
0
50
36
0
0
64
0.94

Tables:   1

The End!