Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004333.1 Hibiscus syriacus cultivar Beakdansim tig00009500_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67946

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5932--5999
19
3.6
19
80
4
75
20
22
19
38
1.94
7319--7367
24
2.0
24
84
8
62
40
4
10
44
1.57
21564--21593
15
1.9
16
93
6
53
86
3
10
0
0.67
24204--24258
13
4.2
13
81
4
56
50
5
0
43
1.25
24283--24379
42
2.5
38
78
15
108
50
1
3
45
1.24
24295--24426
42
3.2
42
75
8
135
51
0
3
44
1.22
24362--24448
41
2.1
42
82
8
106
54
1
1
43
1.15
24419--24482
27
2.5
27
85
7
80
43
1
1
53
1.19
24590--24660
27
2.4
28
81
13
81
52
0
2
45
1.15
25787--25958
4
43.8
4
72
10
59
3
61
0
35
1.13
25793--25958
12
13.8
12
73
19
66
3
61
0
34
1.13
25785--25958
16
10.8
16
73
12
124
3
61
0
35
1.13
26364--26462
22
4.7
22
76
14
102
24
31
21
23
1.98
26364--26463
42
2.4
42
96
0
182
24
31
21
24
1.98
26482--26574
20
4.7
20
87
0
123
20
24
22
32
1.98
27370--27480
57
1.9
57
88
0
168
42
18
11
27
1.85
30513--30584
36
2.0
36
97
0
135
30
6
30
31
1.84
31150--31199
20
2.5
20
93
3
82
40
0
10
50
1.36
31850--31920
21
3.4
21
82
7
81
42
19
0
38
1.52
32527--32649
64
1.9
63
85
4
167
44
4
5
44
1.49
32545--32723
34
5.4
34
69
21
101
44
4
6
44
1.49
32509--32703
34
5.8
34
69
17
113
42
5
6
46
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34502--34652
56
2.7
56
82
3
187
37
7
11
43
1.70
36220--36456
130
1.8
130
87
1
350
40
17
7
34
1.77
39444--39475
13
2.5
13
95
5
57
37
12
15
34
1.85
39267--39650
205
1.9
206
89
0
599
34
18
19
27
1.95
39984--40338
177
2.0
176
86
2
498
34
19
16
29
1.94
41923--41983
2
30.5
2
100
0
122
49
0
0
50
1.00
48000--48258
130
2.0
130
84
4
344
42
15
9
32
1.79
50079--50108
15
1.9
16
93
6
53
26
20
20
33
1.97
50232--50281
6
8.3
6
89
8
66
80
2
0
18
0.82
50235--50292
3
20.0
3
79
10
50
74
1
0
24
0.92
50235--50288
12
4.4
12
81
11
56
75
1
0
22
0.89
51051--51121
36
2.0
36
86
5
99
38
16
14
30
1.89
53003--53067
2
34.5
2
73
17
50
47
4
3
44
1.39
53070--53267
101
2.0
101
87
2
292
33
5
16
44
1.71
53336--53438
2
52.0
2
70
16
63
45
2
7
43
1.47
53340--53438
17
6.2
16
71
18
57
45
3
8
43
1.49
53321--53370
21
2.4
21
80
6
57
48
6
4
42
1.46
56424--56473
21
2.4
21
90
3
75
24
20
10
46
1.81
62269--62306
18
2.1
18
90
0
58
34
7
5
52
1.53

Tables:   1

The End!