Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004334.1 Hibiscus syriacus cultivar Beakdansim tig00009501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56399

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1039--1107
31
2.2
31
84
0
84
39
20
10
30
1.85
1162--1253
33
2.8
33
85
1
114
36
16
8
38
1.79
2079--2116
16
2.4
16
86
8
51
55
15
2
26
1.54
3835--3885
20
2.5
21
84
9
70
19
25
15
39
1.91
9800--9866
28
2.4
28
89
0
98
32
23
5
37
1.79
9947--10240
46
6.3
46
88
2
408
24
19
10
45
1.81
10102--10227
20
5.7
20
71
20
72
22
22
11
44
1.84
9947--10240
138
2.1
141
89
3
450
24
19
10
45
1.81
10723--10813
20
4.5
20
81
11
96
26
26
15
31
1.96
10734--10794
22
2.8
23
85
9
67
26
29
14
29
1.95
10723--10813
42
2.3
39
84
5
110
26
26
15
31
1.96
15511--15574
21
3.1
21
95
2
112
35
21
0
42
1.54
17964--18069
55
1.9
54
83
5
133
30
16
15
37
1.90
22308--22446
67
2.1
67
81
10
160
20
14
10
53
1.70
26874--26984
25
4.4
24
67
13
62
63
10
0
24
1.32
26875--26943
32
2.1
34
83
5
88
66
10
0
23
1.21
26864--27034
74
2.3
76
92
5
287
60
11
0
28
1.35
31558--31660
54
1.9
54
85
0
143
24
20
19
35
1.95
36036--36229
45
4.3
45
91
0
309
31
22
6
39
1.79
36331--36452
61
2.0
61
83
3
156
29
31
17
22
1.96
40763--40820
25
2.3
25
100
0
116
36
3
12
48
1.57
43289--43338
19
2.6
19
81
12
66
82
4
12
2
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44108--44222
35
3.2
37
60
9
94
30
6
11
51
1.64
44105--44246
70
2.0
70
100
0
284
30
7
11
51
1.64
44354--44383
9
3.4
9
90
9
53
6
10
0
83
0.81
44354--44389
17
2.1
18
94
5
65
8
11
0
80
0.90
46646--46678
15
2.3
15
89
5
50
33
39
6
21
1.78
47779--47808
16
1.9
16
93
6
53
10
13
3
73
1.21
53096--53167
35
2.1
35
94
0
126
37
11
16
34
1.84
53646--54031
56
6.9
56
84
2
510
36
10
17
36
1.84
53644--54025
111
3.4
111
87
1
525
36
10
17
36
1.84

Tables:   1

The End!