genome.fa.s4335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004335.1 Hibiscus syriacus cultivar Beakdansim tig00009503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108622

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3289--3389	33	3.1	33	97	0	193	25	17	25	30	1.97
3299--3384	17	5.2	17	66	20	65	25	19	24	30	1.98
3289--3375	17	5.2	17	65	15	56	25	18	26	29	1.98
8180--8286	34	3.1	33	78	14	85	34	0	3	61	1.14
8213--8291	34	2.4	34	85	8	101	37	0	1	60	1.05
8431--8484	17	3.2	17	72	0	54	31	0	3	64	1.11
10066--10142	21	3.5	21	72	19	66	19	31	24	24	1.98
10651--10748	34	2.9	34	89	0	142	55	4	4	36	1.38
11149--11773	128	4.9	128	95	1	1082	33	19	24	22	1.97
11844--11884	8	5.2	8	82	5	57	36	29	0	34	1.58
14885--14923	12	3.2	12	85	3	51	46	0	0	53	1.00
16654--16767	59	1.9	58	84	8	151	35	7	3	53	1.45
16654--16767	29	3.9	30	77	6	110	35	7	3	53	1.45
16780--16899	29	4.1	28	77	11	102	54	1	5	39	1.32
16802--16914	29	3.8	28	78	16	113	55	2	3	38	1.31
16769--16899	58	2.3	57	81	15	146	56	1	5	36	1.31
17206--17292	16	5.4	16	75	2	66	49	29	10	10	1.70
17201--17295	33	2.9	33	76	7	113	52	27	9	10	1.66
17887--17977	46	2.0	46	84	4	121	40	26	14	18	1.89
17972--18031	32	1.9	31	86	3	84	35	35	11	18	1.87
19175--19220	19	2.3	20	81	7	58	28	28	17	26	1.98
19255--19307	21	2.5	21	87	6	81	22	26	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19297--19369	21	3.5	21	90	1	103	38	17	23	20	1.93
19355--19492	41	3.4	41	81	2	170	36	25	15	22	1.94
19358--19472	20	5.7	20	79	6	115	33	26	16	22	1.95
19659--19702	22	2.0	22	95	0	79	20	45	15	18	1.85
20162--20216	25	2.2	24	78	15	58	20	9	18	52	1.71
21527--21593	20	3.4	20	81	2	73	38	23	22	14	1.92
21582--21640	14	3.9	14	74	20	55	49	22	16	11	1.78
21566--21656	33	2.8	33	96	0	164	47	20	18	13	1.82
21566--21662	19	5.6	19	68	22	79	45	20	19	14	1.85
21657--21702	20	2.3	20	96	0	83	15	21	26	36	1.93
21673--21728	20	2.8	20	88	0	76	23	16	28	32	1.96
22069--22129	21	3.0	20	73	7	68	22	42	13	21	1.87
22069--22185	42	2.8	40	84	5	126	23	39	16	20	1.92
23560--23598	14	2.8	14	84	0	51	35	0	17	46	1.49
23732--23781	14	3.0	17	75	24	61	48	18	22	12	1.80
23800--23852	20	2.7	20	93	0	79	15	22	22	39	1.91
24082--24194	20	5.7	20	93	0	172	29	20	26	23	1.99
24123--24239	41	2.9	41	85	3	130	22	17	26	33	1.96
24225--24276	20	2.5	21	81	3	61	21	21	17	40	1.91
25059--25112	24	2.2	24	90	0	81	22	16	20	40	1.91
25286--25310	12	2.1	12	100	0	50	72	0	28	0	0.86
27628--27719	19	5.4	19	68	24	87	46	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27632--27754	33	3.7	33	95	0	210	47	18	21	12	1.81
27628--27758	19	7.7	18	65	25	79	46	19	22	12	1.82
27764--27876	33	3.4	33	91	0	172	12	22	19	46	1.83
27785--27876	19	5.4	19	67	24	78	14	22	17	45	1.84
27983--28019	14	2.6	15	87	12	60	48	21	0	29	1.50
29367--29433	21	3.2	21	68	4	55	19	20	35	23	1.95
29707--29891	91	2.0	90	89	6	282	48	17	11	22	1.79
31590--31744	19	8.8	19	69	22	106	44	20	22	12	1.85
31639--31727	14	5.6	14	70	23	61	41	22	23	12	1.87
31590--31744	33	4.5	33	87	5	193	44	20	22	12	1.85
31745--31837	33	2.8	32	86	4	114	10	19	24	45	1.82
31776--31843	20	3.8	19	67	26	58	11	20	22	45	1.83
32362--32453	20	4.6	20	84	2	130	19	21	19	39	1.93
32362--32453	41	2.3	40	88	1	130	19	21	19	39	1.93
32382--32591	41	5.1	41	72	11	135	28	19	20	32	1.96
32443--32515	21	3.5	21	81	3	85	38	17	21	21	1.93
32357--32494	61	2.3	62	78	6	156	27	20	19	32	1.97
32570--32618	21	2.3	22	79	6	66	36	16	26	20	1.93
36114--36172	21	2.8	21	97	0	109	50	23	5	20	1.67
41823--41861	19	2.1	19	95	0	69	51	15	28	5	1.64
45269--45293	3	8.3	3	100	0	50	68	0	32	0	0.90
47255--47299	21	2.2	20	88	8	63	73	2	0	24	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51933--51997	2	33.0	2	95	3	105	46	0	3	50	1.17
59174--59213	14	2.9	14	100	0	80	42	15	20	22	1.88
69972--70034	17	3.9	17	79	6	69	71	3	1	23	1.09
72096--72144	21	2.3	21	100	0	98	24	44	4	26	1.71
77842--77880	17	2.4	17	95	4	71	43	0	5	51	1.24
87651--87686	15	2.4	15	100	0	72	22	41	11	25	1.86
89582--89653	31	2.3	31	85	0	99	50	13	11	25	1.75
99598--99624	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!