Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004336.1 Hibiscus syriacus cultivar Beakdansim tig00009505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72871

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2113--2181
23
3.0
23
84
0
93
33
24
24
17
1.96
2693--2730
2
19.0
2
100
0
76
50
0
0
50
1.00
14722--14797
36
2.1
36
97
0
143
43
14
10
31
1.79
19257--19286
15
2.0
15
100
0
60
13
46
26
13
1.80
19709--19784
36
2.1
36
97
0
143
43
14
10
31
1.79
20524--20592
35
1.9
37
91
5
115
40
15
15
27
1.88
20977--21013
12
3.0
12
92
4
56
24
2
2
70
1.14
21483--21516
9
3.8
9
92
7
52
20
2
0
76
0.92
21483--21517
13
2.6
14
90
4
54
20
2
0
77
0.90
24518--24569
7
7.3
7
77
12
52
80
5
13
0
0.88
24518--24569
22
2.4
22
90
9
81
80
5
13
0
0.88
24518--24586
20
3.3
21
86
8
79
79
5
13
1
0.97
24518--24578
14
4.3
14
80
12
52
80
6
13
0
0.90
24524--24597
32
2.2
35
81
13
84
78
6
13
1
1.01
25196--25246
22
2.3
22
96
0
93
35
27
11
25
1.91
26105--26209
36
2.9
36
91
2
165
24
23
13
38
1.91
26105--26214
37
3.0
37
90
2
168
26
23
12
37
1.91
26316--26412
35
2.7
36
88
3
133
24
19
16
39
1.92
26388--26525
65
2.1
67
84
7
178
33
21
7
36
1.83
27142--27527
212
1.8
215
91
3
645
33
26
19
21
1.97
27142--27527
107
3.6
105
91
2
601
33
26
19
21
1.97
27918--27986
35
1.9
37
91
5
115
40
15
15
27
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28374--28410
12
3.0
12
92
4
56
24
2
2
70
1.14
28810--28834
2
12.5
2
100
0
50
48
0
0
52
1.00
28883--28912
9
3.3
9
95
0
51
20
3
0
76
0.92
37773--37809
2
18.5
2
100
0
74
51
0
48
0
1.00
39150--39197
22
2.2
22
96
0
87
43
25
25
6
1.77
43093--43184
30
3.1
30
87
0
121
25
10
30
33
1.90
44335--44367
16
1.9
18
88
11
52
36
3
0
60
1.12
45934--45971
19
2.0
19
94
0
67
26
23
36
13
1.91
46623--46656
14
2.4
14
95
0
59
20
0
8
70
1.13
46677--46765
34
2.6
34
85
0
115
21
1
10
67
1.27
46736--46760
13
1.9
13
100
0
50
20
0
8
72
1.10
46741--46841
35
2.9
36
80
20
108
27
3
8
59
1.45
49040--49078
19
2.0
20
95
5
71
28
35
25
10
1.89
50971--51010
21
1.9
21
89
0
62
57
5
7
30
1.48
54812--54872
23
2.7
23
86
0
86
21
32
19
26
1.97
56768--56818
16
3.0
16
88
8
66
19
0
27
52
1.46
57082--57112
15
2.1
15
100
0
62
35
12
6
45
1.68
57085--57137
14
3.7
14
87
2
61
37
11
3
47
1.58
57465--57505
20
2.0
20
85
0
55
24
41
21
12
1.87

Tables:   1

The End!