Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004337.1 Hibiscus syriacus cultivar Beakdansim tig00009506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62975

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4225--4305
3
27.0
3
97
0
135
29
0
3
66
1.09
4635--4731
49
2.0
48
92
4
160
24
25
12
37
1.91
5134--5214
35
2.2
36
91
4
128
46
20
0
32
1.51
5697--5775
34
2.3
35
84
2
97
31
0
22
45
1.53
5793--5864
34
2.1
34
82
5
83
31
0
23
44
1.54
5686--5863
88
2.0
87
96
3
331
30
2
21
45
1.64
9773--9915
21
6.7
21
77
12
130
45
25
6
22
1.77
9784--9819
12
3.2
12
77
22
51
44
25
8
22
1.80
9769--9915
65
2.3
64
82
11
176
44
25
6
23
1.77
9797--9920
44
2.9
43
90
2
178
44
27
6
21
1.77
16707--16758
20
2.6
20
96
0
95
50
3
19
26
1.65
24328--24377
21
2.2
23
83
16
61
54
2
2
42
1.23
24361--24396
18
1.9
19
88
5
56
47
0
2
50
1.15
25642--25708
30
2.2
30
84
5
82
22
17
8
50
1.74
25651--25710
30
2.0
30
87
6
86
20
20
8
51
1.72
26087--26130
20
2.2
20
80
11
56
27
34
9
29
1.87
28673--28896
96
2.3
96
88
5
321
34
15
22
27
1.95
29236--29718
57
8.5
57
86
2
625
36
10
19
33
1.86
31538--31757
96
2.3
94
82
4
255
36
14
22
26
1.93
31696--31760
20
3.2
20
73
12
62
33
15
26
24
1.95
32102--32476
57
6.5
57
90
3
536
36
12
19
31
1.89
43217--43388
31
5.5
31
96
0
308
19
18
22
40
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46990--47114
62
2.0
62
90
3
198
20
19
22
37
1.94
46990--47100
31
3.6
31
97
0
204
18
19
22
38
1.93
50678--50818
31
4.5
31
97
0
255
19
19
21
39
1.93
52977--53027
26
2.0
25
85
11
68
35
3
15
45
1.65
55996--56034
15
2.5
15
87
4
51
69
2
10
17
1.28

Tables:   1

The End!