genome.fa.s4338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004338.1 Hibiscus syriacus cultivar Beakdansim tig00009508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171413

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6154--6191	18	2.1	18	100	0	76	21	34	10	34	1.87
14601--14654	17	3.2	17	74	10	65	57	3	0	38	1.17
14578--14654	34	2.2	36	90	4	122	54	5	1	38	1.31
22177--22205	3	9.7	3	100	0	58	65	0	0	34	0.93
35939--35991	22	2.4	22	87	9	72	52	1	9	35	1.45
36709--36760	23	2.3	23	87	9	72	40	9	0	50	1.35
48464--48532	22	2.9	22	77	14	66	52	1	1	44	1.19
48436--48513	31	2.4	34	76	20	87	51	0	0	48	1.00
48542--48611	25	2.7	26	82	12	83	44	0	1	54	1.09
48445--48614	75	2.2	77	75	19	169	47	0	1	50	1.16
48927--48999	15	4.9	15	75	9	78	31	16	6	45	1.74
48927--48999	30	2.5	29	88	2	110	31	16	6	45	1.74
58145--58187	20	2.2	20	86	0	59	32	13	20	32	1.92
59026--59703	337	2.0	337	99	0	1347	32	17	23	27	1.96
61841--61893	21	2.5	21	81	0	61	22	26	18	32	1.97
61883--61994	20	5.6	20	84	2	152	36	19	21	22	1.95
61868--61997	61	2.1	60	87	2	179	33	19	20	26	1.96
62172--62237	22	3.0	22	86	0	96	24	39	16	19	1.92
62576--62678	20	5.5	19	78	14	81	13	16	24	45	1.83
62643--62686	20	2.2	20	87	0	61	13	13	20	52	1.74
64539--64590	20	2.6	20	93	0	86	40	25	17	17	1.90
64629--64675	20	2.3	20	92	0	76	36	21	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64599--64713	53	2.2	53	81	6	126	43	20	19	17	1.88
64542--64707	87	1.9	87	91	0	269	43	20	18	16	1.87
64720--64768	20	2.5	20	80	6	55	20	16	24	38	1.92
64742--64838	33	2.9	34	81	3	133	12	18	22	46	1.82
66806--66841	14	2.6	14	90	0	54	30	0	22	47	1.52
66947--67010	33	1.9	34	83	3	85	40	20	25	14	1.89
67016--67099	33	2.5	33	90	1	123	15	21	19	44	1.87
67083--67130	20	2.4	20	89	6	71	18	16	27	37	1.92
70458--70504	20	2.3	20	92	0	76	21	19	27	31	1.97
70491--70584	20	4.7	20	90	0	143	21	21	20	37	1.95
70459--70603	60	2.4	60	72	15	145	22	20	23	33	1.97
75838--75954	51	2.3	50	83	4	137	15	35	27	22	1.94
76127--76160	10	3.5	10	88	8	52	35	0	0	64	0.94
76127--76160	9	3.6	9	88	11	50	35	0	0	64	0.94
76166--76205	18	2.3	18	91	4	64	30	5	2	62	1.29
78384--78456	25	3.0	24	68	24	62	26	6	4	63	1.38
92215--92239	3	8.3	3	100	0	50	68	0	32	0	0.90
94218--94261	7	6.3	7	100	0	88	27	45	0	27	1.54
102216--102244	2	14.5	2	100	0	58	48	0	0	51	1.00
104761--104813	25	2.1	25	82	0	61	33	13	16	35	1.88
112826--112861	7	5.1	7	100	0	72	27	30	13	27	1.94
113703--113748	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120229--120526	6	49.7	6	98	0	578	34	0	15	50	1.45
120673--120703	5	6.0	5	92	7	53	80	0	19	0	0.71
126759--126829	3	23.0	3	94	5	124	67	0	0	32	0.91
126998--127595	76	7.9	76	96	0	1081	35	20	21	22	1.96
128265--128341	22	3.5	22	78	0	91	37	14	12	35	1.84
128697--128807	54	2.1	54	87	0	159	22	22	15	39	1.91
131022--131304	93	3.1	92	89	3	408	37	21	12	28	1.90
133535--133577	21	2.0	21	81	0	50	27	27	25	18	1.98
134126--134219	2	47.0	2	100	0	188	50	0	0	50	1.00
134598--134814	30	7.2	30	100	0	434	23	19	23	33	1.97
138014--138056	21	2.0	21	81	0	50	27	27	25	18	1.98
138599--138650	2	26.0	2	100	0	104	50	0	0	50	1.00
139032--139188	30	5.2	30	100	0	314	23	19	24	33	1.97
140564--140596	17	2.0	16	94	5	57	0	15	0	84	0.61
147510--147570	3	20.0	3	89	3	77	60	1	0	37	1.07
149470--149506	17	2.2	17	95	0	65	54	0	5	40	1.24
151897--151945	19	2.7	18	84	6	62	46	0	0	53	1.00
157211--157236	2	13.0	2	100	0	52	50	0	0	50	1.00
162549--162606	30	1.9	30	96	0	107	18	24	29	27	1.98
166234--166264	14	2.2	14	100	0	62	67	0	12	19	1.22
166775--166846	7	9.1	8	76	15	62	72	0	1	26	0.93
166772--166846	23	3.2	22	75	20	64	70	0	1	28	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169677--169750	30	2.6	29	80	4	78	37	13	9	39	1.77

Tables:   1

The End!