Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004339.1 Hibiscus syriacus cultivar Beakdansim tig00009509_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82359

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4790--4873
13
6.8
13
75
15
72
66
3
1
28
1.15
4786--4873
29
3.0
29
74
12
81
68
3
1
27
1.13
8025--8103
36
2.2
36
97
0
149
37
7
16
37
1.77
11613--11656
22
2.0
22
86
0
61
13
9
9
68
1.40
15056--15112
19
2.8
20
86
7
80
31
24
21
22
1.98
17454--17494
20
2.2
18
86
8
55
70
7
9
12
1.33
17479--17528
23
2.2
23
82
3
57
60
14
12
14
1.60
18246--18302
16
3.6
16
85
2
80
35
19
7
38
1.79
19534--19588
20
2.8
19
75
8
56
25
9
7
58
1.55
19600--19666
3
22.3
3
100
0
134
67
0
0
32
0.91
31115--31180
23
2.9
23
90
0
96
30
24
22
22
1.99
31199--31416
103
2.1
103
95
1
393
37
22
13
26
1.92
32778--32834
20
2.7
22
83
10
82
19
26
24
29
1.98
33715--33757
17
2.6
16
78
7
50
39
25
0
34
1.56
36395--36472
23
3.3
23
85
1
102
33
23
19
24
1.97
36479--36697
104
2.1
103
93
2
368
36
23
13
26
1.91
38071--38130
20
2.9
21
90
7
95
18
26
25
30
1.98
39019--39061
17
2.6
16
78
7
50
39
25
0
34
1.56
41685--41750
23
2.9
23
86
0
87
31
22
22
22
1.98
41769--41986
103
2.1
103
95
1
393
37
22
13
26
1.92
43362--43420
20
2.8
21
82
7
75
20
23
22
33
1.97
44398--44585
56
3.4
55
85
3
227
30
19
17
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44576--44601
13
2.0
13
100
0
52
23
15
23
38
1.92
44521--44653
68
2.0
68
90
0
212
30
18
19
31
1.95
44589--44735
55
2.7
55
89
0
231
31
18
20
29
1.96
44467--44711
123
2.0
124
91
0
402
30
19
19
30
1.97
45081--45285
95
2.1
96
87
0
286
26
22
17
33
1.96
45274--45332
21
2.9
19
78
7
64
30
22
15
32
1.94
48160--48247
39
2.4
36
79
7
97
32
12
2
52
1.52
48286--48319
13
2.7
13
90
4
52
23
0
0
76
0.79
48289--48330
20
2.1
20
82
8
50
28
0
2
69
1.01
48416--48451
18
1.9
19
88
5
56
69
0
0
30
0.89
51954--52049
29
3.3
29
88
0
138
28
21
19
30
1.98
52415--52480
32
2.1
32
82
5
80
53
4
6
36
1.46
53855--53893
15
2.6
15
79
0
51
38
12
7
41
1.72
54612--54675
25
2.5
26
92
7
112
43
7
6
42
1.58
54664--54732
26
2.6
26
80
11
86
49
4
4
42
1.42
54654--54754
19
5.1
19
71
15
71
50
5
3
39
1.45
54747--54805
31
1.9
31
96
0
109
42
6
6
44
1.57
54859--55002
12
11.5
13
69
16
63
42
1
4
51
1.32
54834--54912
22
3.5
22
77
11
70
41
2
5
50
1.38
54852--54948
11
9.4
11
70
18
66
41
2
4
52
1.32
54921--55362
2
222.0
2
64
22
132
46
5
3
45
1.43
55149--55214
23
2.7
23
79
9
69
46
3
4
45
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54870--55358
55
8.7
57
66
21
171
45
5
3
45
1.43
57302--57406
39
2.7
39
78
8
115
47
0
18
33
1.55
57438--57483
2
23.0
2
100
0
92
50
0
0
50
1.00
58024--58076
27
2.0
27
82
14
65
62
1
3
32
1.24
58237--58265
14
2.0
15
93
6
51
62
3
0
34
1.12
64405--64495
31
2.9
31
83
3
110
16
18
10
53
1.71
64412--64495
32
2.7
32
84
1
107
16
19
10
53
1.71
69799--69887
38
2.6
33
82
17
119
19
19
22
39
1.93
70239--70281
6
7.0
6
97
2
77
32
0
51
16
1.45
70315--70344
14
2.1
14
100
0
60
0
50
0
50
1.00
70315--70352
17
2.5
15
87
12
51
0
47
0
52
1.00
74410--74448
16
2.4
16
82
0
51
33
10
0
56
1.33
77640--77686
3
15.7
3
100
0
94
68
0
0
31
0.90
79795--79903
50
2.1
52
86
5
159
27
17
17
37
1.92

Tables:   1

The End!