Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000434.1 Hibiscus syriacus cultivar Beakdansim tig00000796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65162
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Found at i:765 original size:18 final size:19
Alignment explanation
Indices: 737--777 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
727 TATGGATATG
737 TTGTGAGTTCTAGAATAGT
1 TTGTGAGTTCTAGAATAGT
756 TTGT-AGTTCTAGAATAGT
1 TTGTGAGTTCTAGAATAGT
774 TTGT
1 TTGT
778 TATCTTGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.46
Consensus pattern (19 bp):
TTGTGAGTTCTAGAATAGT
Found at i:2682 original size:201 final size:200
Alignment explanation
Indices: 2269--2949 Score: 895
Period size: 200 Copynumber: 3.4 Consensus size: 200
2259 TATACCAGTA
* * * * * **
2269 ACATTGCAAAGTTACCTATTACATTATAAATATCGGTTTCGATATTTTTGGGATCGATACAATTT
1 ACATTGTAAATTTACATATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTT
* * * ** * *
2334 -TAAATGTATCGACACATTATGCATACACCTCGTTAAGCATTCATTCT-AATAAAAAAGTATCGA
66 ATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTGGA-CAAAAAGTATCGA
* * * * *
2397 CACAAACTT-AAAAAGTGTTGATACATTATGTAGAA-CTATTTTCTCATAAAACTGATATATTTC
130 CAC-AAGTTCAACAAGTGTCGATACATTATGTA-AACCTATTTTCTCATAAAACTGGTAAATTTC
* *
2460 TATCGGGT
193 TACCGGTT
* * *
2468 ACATTGTAAATTTACATATTACATTGTAATTATCGGTTTCAATGTTTTTGGGATCGATACTTTTA
1 ACATTGTAAATTTACATATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTT
* *
2533 ATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTGGACAAAAAGTATTGAT
66 ATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTGGACAAAAAGTATCGAC
* * * *
2598 ACAAGTTCAACAAGTGTCAATACAATTATGTAAACCTATTTTTTCATAAATCCGGTAAATTTCTA
131 ACAAGTTCAACAAGTGTCGATAC-ATTATGTAAACCTATTTTCTCATAAAACTGGTAAATTTCTA
2663 CCGGTT
195 CCGGTT
* * *
2669 ACATTGTAAATTTACATATGACATTATAATTATAGGTTTCGATGTTTTTGAGATCGATACTTTTT
1 ACATTGTAAATTTACATATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTT
* * *
2734 ATAAATGTATCGACACTTTATGCGTGCACC-CTTTTGGGAATTCATTCTGGACAACAAGTATCGA
66 ATAAATGTATCGACACTTTATGCGTGCACCTCGTTT-GGCATTCATTCTGGACAAAAAGTATCGA
* * * *
2798 CACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCGTAAAACTGGTAAATTTATA
130 CACAAGTTCAACAAGTGTCGATACATTATGTAAACCTATTTTCTCATAAAACTGGTAAATTTCTA
2863 CCGGTT
195 CCGGTT
* * *
2869 ACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTAGGGATCGATACTTTTT
1 ACATTGTAAATTTACATATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTT
2934 ATAAATGTATCGACAC
66 ATAAATGTATCGACAC
2950 ATATTTAGGT
Statistics
Matches: 422, Mismatches: 54, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
199 59 0.14
200 190 0.45
201 173 0.41
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (200 bp):
ACATTGTAAATTTACATATTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTT
ATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATTCATTCTGGACAAAAAGTATCGAC
ACAAGTTCAACAAGTGTCGATACATTATGTAAACCTATTTTCTCATAAAACTGGTAAATTTCTAC
CGGTT
Found at i:5441 original size:19 final size:19
Alignment explanation
Indices: 5417--5464 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
5407 TTACATTCAC
*
5417 ATACAAAATTATAAATTGT
1 ATACAAAATTATAAATCGT
*
5436 ATACAAAATTATGAATCGT
1 ATACAAAATTATAAATCGT
5455 ATACAAAATT
1 ATACAAAATT
5465 TCCCCTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:7226 original size:199 final size:199
Alignment explanation
Indices: 6757--8143 Score: 1800
Period size: 199 Copynumber: 7.0 Consensus size: 199
6747 TAATTTAAAC
* * * * * * * *
6757 AAGTATCGACACAACTTTAAAAAGTGTCGA-AC-TTATGCAGACATATTTTCGAATTTACAGGTA
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGTA
* * * *
6820 TATTTCTACCGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTATATGG
66 TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTGG
* * *
6885 GGTCGATAC-TTTTATAAAAGTATCGACACTTTATTCGTGCACCCCAGTTGGTCATTCATTCTGG
131 GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCA-CCCGGTTGGTCATTCATTCTGG
*
6949 AAAAA
195 ACAAA
* * * * *
6954 AAGTCTCGACAC-AATTTAAAAAATGTCAATACATTATGTAGACCTATTTT-TAAATTAACCGGT
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCT-AATTAACCGGT
* * *
7017 ATATTTCTACCGTTTACATTGTAAATTTACATATTACATTATAATTATAGGT-TTCGATGTTTTT
65 ATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATA-TTATTCGATGTTTTT
* ** ** **
7081 GGGATCGATATTTTTTATAAATGTATCGACACTTTATGAGTGCACCCTTTTGGGAATTCATTCTG
129 GGGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCGGTTGGTCATTCATTCTG
7146 GACAAA
194 GACAAA
* * * *
7152 AAGTATCGACACAAATTCCACAAGTGTCGATACATGATGAAGACCTATTATCTAATTAACCGGTA
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGTA
* * * * * *
7217 TATTTCTACCTGTTAGATTGGAAATTGACCTATTACATTATAATTATATTATTCAATGTTTATGG
66 TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTGG
* *
7282 GATTGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTCATTCATTCTGG
131 GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCA-CCCGGTTGGTCATTCATTCTGG
7347 ACAAAA
195 AC-AAA
* * * * *
7353 AAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTGTTTTCTCATAAACCGGTA
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGTA
* *
7418 AATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTA-AGGGT-TTCGATGTTTTT
66 TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATA--TTATTCGATGTTTTT
* **
7481 GGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTAGG-CATTCATTCT
129 GGGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCGGTT-GGTCATTCATTCT
7545 GGACAAA
193 GGACAAA
* * * * * *
7552 AAGTATCGACACAAGTTCCACAAGTCTCGATACATTATGTAGACC-AGTTTTCTCATAAACCGTT
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTA-TTTTCTAATTAACCGGT
* ** *
7616 AAATTTCTATTGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTATG
65 ATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTG
*
7681 GGATCGATAATTTTTATAAATGTATCGACACTTTATTCGTGCACCTCGGTTGGTCATTCATTCTG
130 GGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACC-CGGTTGGTCATTCATTCTG
7746 GACAAA
194 GACAAA
* * *
7752 AAGTATCGACACAAATTCTACAAGTGTCGATACATTATGTAGACCTATTCTCTAATTAACCGATA
1 AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGTA
*
7817 TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTTTATTCGATGTTTTTGG
66 TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTGG
*
7882 GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCTCCTCGGTTGGTCATTCATTCTGG
131 GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACC-CGGTTGGTCATTCATTCTGG
7947 ACAAA
195 ACAAA
* * * *
7952 ATA-TATCGACAC-AATTTAAAAAGTGTCGATACATTATGTAAACCTATTTTCTAATTAACCGAT
1 A-AGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGT
* * * *
8015 ATATATCTACTGGTTACATTGTAAATTTACCTATTACATTAT-ATTATCTCATTCGATGTTTTTG
65 ATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTG
* * *
8079 GGATCGATA-TTTTTAATAAA--TATTGACACTTTATTCATGCACCTCGGTTGGGCAATT-ATTC
130 GGATCGATACTTTTT-ATAAATGTATCGACACTTTATTCGTGCACC-CGGTTGGTC-ATTCATTC
8140 TGGA
192 TGGA
8144 GATTACTGAA
Statistics
Matches: 1059, Mismatches: 109, Indels: 45
0.87 0.09 0.04
Matches are distributed among these distances:
196 51 0.05
197 21 0.02
198 157 0.15
199 415 0.39
200 256 0.24
201 158 0.15
202 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (199 bp):
AAGTATCGACACAAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCGGTA
TATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTTTGG
GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCGGTTGGTCATTCATTCTGGA
CAAA
Found at i:7553 original size:400 final size:397
Alignment explanation
Indices: 6757--8143 Score: 1863
Period size: 400 Copynumber: 3.5 Consensus size: 397
6747 TAATTTAAAC
* * * * * * *
6757 AAGTATCGACACAACTTTAAAAAGTGTCGA-AC-TTATGCAGACATATTTTCGAATTTACAGGTA
1 AAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGAAGACCTATTTTCTAATTAACCGGTA
* *
6820 TATTTCTACCGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTATATGG
66 TATTTCTACTGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTTTATGG
* *
6885 GGTCGATAC-TTTTATAAAAGTATCGACACTTTATTCGTGCACCCC-AGTTGGTCATTCATTCTG
131 GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGA-TTGGTCATTCATTCTG
* * * * *
6948 GA-AAAAAAGTCTCGACACAATTTAAAAAATGTCAATACATTATGTAGACCTATTTT-TAAATTA
195 GACAAAAAAGTATCGACACAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCT-AATTA
* *
7011 ACCGGTATATTTCTACCGTTTACATTGTAAATTTACATATTACATTATAATTATAGGTTTCGATG
259 ACCGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTA-AGGTTTCGATG
* * *
7076 TTTTTGGGATCGATATTTTTTATAAATGTATCGACACTTTATGAGTGCACCCTTTTGGGAATTCA
323 TTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTT-GGCATTCA
7141 TTCTGGACAAA
387 TTCTGGACAAA
* * * *
7152 AAGTATCGACACAAATTCCACAAGTGTCGATACATGATGAAGACCTATTATCTAATTAACCGGTA
1 AAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGAAGACCTATTTTCTAATTAACCGGTA
* *
7217 TATTTCTACCT-GTTAGATTGGAAATTGACCTATTACATTATAATTATATTATTCAATGTTTATG
66 TATTTCTA-CTGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTTTATG
*
7281 GGATTGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTCATTCATTCTG
130 GGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTCATTCATTCTG
* * * *
7346 GACAAAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTGTTTTCTCATAA
195 GACAAAAAAGTATCGACACAA-TTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTA
*
7411 ACCGGTAAATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTAAGGGTTTCGATG
259 ACCGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTAA-GGTTTCGATG
7476 TTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTAGGCATTCA
323 TTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTT-GGCATTCA
7541 TTCTGGACAAA
387 TTCTGGACAAA
* * * * * * * *
7552 AAGTATCGACACAAGTTCCACAAGTCTCGATACATTATGTAGACC-AGTTTTCTCATAAACCGTT
1 AAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGAAGACCTA-TTTTCTAATTAACCGGT
* * * *
7616 AAATTTCTATTGGTTACATTGTAAATTTACCTATTACATTATAATTATATTATTCGATGTTTATG
65 ATATTTCTACTGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTTTATG
* * *
7681 GGATCGATAATTTTTATAAATGTATCGACACTTTATTCGTGCACCTCGGTTGGTCATTCATTCTG
130 GGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTCATTCATTCTG
* *
7746 GAC-AAAAAGTATCGACACAAATTCTACAAGTGTCGATACATTATGTAGACCTATTCTCTAATTA
195 GACAAAAAAGTATCGACAC-AATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTA
* ***
7810 ACCGATATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTTTATTCGATG
259 ACCGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTAAGGT-TTCGATG
* * **
7875 TTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCTCCTCGGTTGGTCATTC
323 TTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACC-CTTTTGG-CATTC
7940 ATTCTGGACAAA
386 ATTCTGGACAAA
* *
7952 ATA-TATCGACAC-AATTTAAAAAGTGTCGATACATTATGTAA-ACCTATTTTCTAATTAACCGA
1 A-AGTATCGACACAAATTCAAAAAGTGTCGATACATTATG-AAGACCTATTTTCTAATTAACCGG
* * * * * *
8014 TATATATCTACTGGTTACATTGTAAATTTACCTATTACATTAT-ATTATCTCATTCGATGTTTTT
64 TATATTTCTACTGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTTTAT
* * * * *
8078 GGGATCGATA-TTTTTAATAAA--TATTGACACTTTATTCATGCACCTCGGTTGGGCAATT-ATT
129 GGGATCGATACTTTTT-ATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTC-ATTCATT
8139 CTGGA
192 CTGGA
8144 GATTACTGAA
Statistics
Matches: 888, Mismatches: 84, Indels: 39
0.88 0.08 0.04
Matches are distributed among these distances:
395 26 0.03
396 40 0.05
397 98 0.11
398 88 0.10
399 260 0.29
400 374 0.42
401 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (397 bp):
AAGTATCGACACAAATTCAAAAAGTGTCGATACATTATGAAGACCTATTTTCTAATTAACCGGTA
TATTTCTACTGGTTACATTGGAAATTGACCTATTACATTATAATTATATTATTCGATGTTTATGG
GATCGATACTTTTTATAAATGTATCGACACTTTATTCGTGCACCCCGATTGGTCATTCATTCTGG
ACAAAAAAGTATCGACACAATTCAACAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAC
CGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTAAGGTTTCGATGTTT
TTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGCATTCATTCT
GGACAAA
Found at i:13113 original size:201 final size:200
Alignment explanation
Indices: 12335--13310 Score: 1386
Period size: 201 Copynumber: 4.9 Consensus size: 200
12325 TGCGGAATTT
* ** * * *
12335 AAAAAGGTATCGACACAAATTTAAAAAGTGTCGATACATCATGTAGACATATTTTCTCATAAAAC
1 AAAAA-GTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAAC
* * * *
12400 CGGTAAATTTCTACCGGTTACATT-ATAAATTTACCTATTACATTATAATTAAGGGTTTCAATGT
65 CGGTAAATTTATACCGGTTACATTGA-AAAATTACCTATTACATTATAATTATGGGTTTCGATGT
* * * * *
12464 GTTT-GGAATCAATACATTTTATAAATGTATCGACACTTTATGCGTGCACCTTTTTGGACATTCA
129 TTTTAGG-ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCA
*
12528 TTCTAGAC
193 TTCTGGAC
* * *
12536 AAAAAAATATCGACACAAGTTCCACAAGTGTCGATATATTATGTAGACATATTTTCTCAT-AAAC
1 -AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAAC
* * * * * *
12600 CGGTAAATTTCTACAGGTTACATTGTAAATTTACCTATTACATTATAATTAAGGGTTTTGATGTT
65 CGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTT
* *
12665 TTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTACACCCTTTTGGGCATTCATT
130 TTTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCATT
12730 CTGGAC
195 CTGGAC
* *
12736 AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAAACCTGTTTTCTCAT--AACC
1 AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
* * * * *
12799 GATAAATTTATACCAGTTAGATTGTAAACTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
*
12864 TTAGGATTGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCTTTTGGGCATTCATT
131 TTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCA-CCCTTTTGGGCATTCATT
12929 CTGGAC
195 CTGGAC
* * *
12935 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
1 AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
* * * * *
13000 GATATATTTATATCGGTTACATTGAAAAATTACATATTACATTATACTTATGGGTTTCGATGTTT
66 GGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * *
13065 TTAGGATCGATACTTTTTATAAATGTATCGATATTTTATGTGTGCACCCCTTTTGGGCATTCATT
131 TTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCA-CCCTTTTGGGCATTCATT
13130 CTGGAC
195 CTGGAC
*
13136 AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
1 AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
* * * * *
13201 GGTATATTTATATCAGTTACATTGAAAAATTACTTATTATATTATAATTATGGGTTTCGATGTTT
66 GGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
*
13266 TTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGC
131 TTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGC
13311 CTATTCTCTC
Statistics
Matches: 707, Mismatches: 62, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
198 104 0.15
199 133 0.19
200 125 0.18
201 340 0.48
202 5 0.01
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (200 bp):
AAAAAGTATCGACACAAGTTCCACAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
GGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
TTAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCTTTTGGGCATTCATTC
TGGAC
Found at i:13758 original size:19 final size:19
Alignment explanation
Indices: 13734--13782 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
13724 TTACATTCAC
13734 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
13753 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
13772 ATACAAAATTA
1 ATACAAAATTA
13783 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:13848 original size:19 final size:19
Alignment explanation
Indices: 13824--13867 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
13814 TATTCTTGTG
13824 TAAATCACATACAAAATTA
1 TAAATCACATACAAAATTA
**
13843 TAAATCGTATACAAAATTA
1 TAAATCACATACAAAATTA
13862 TAAATC
1 TAAATC
13868 TTATATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAATCACATACAAAATTA
Found at i:13872 original size:19 final size:19
Alignment explanation
Indices: 13832--13872 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
13822 TGTAAATCAC
13832 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
13851 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
13870 ATA
1 ATA
13873 TATTTTGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:15380 original size:182 final size:182
Alignment explanation
Indices: 15073--15997 Score: 1410
Period size: 182 Copynumber: 5.1 Consensus size: 182
15063 ACAATAACCC
* * *
15073 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGACGCTATTACTGCTTGTCTTTTGAA
1 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * * * * *
15138 TTCCAAAAGTATCGATACTTATAATAAAATTTTGACACTTTCAACATATCTGGTGGCGCTTTACC
66 TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACC
*
15203 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATAGTT
131 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
* * *
15255 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTTTAGGCGCTATTACTGTTTGTCTTTTAAA
1 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * *
15320 TTCCAAAAATGTCGATACTTATAATAAAGTATCGACACTAAT-AACATATCCGGTGGCGCTTTAC
66 TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACT-TTCAACATATCCGGTAGCGCTTTAC
* *
15384 CGGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTCACCTGTTATATTTTT
130 CGGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
* *
15437 AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGTGCTATGACTGCTTGTCTTTTAAA
1 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * * *
15502 TTCCAAAAGTGTCGACACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCTCTTTATC
66 TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACC
*
15567 GGTTTTG--AATTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
131 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
*
15617 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAAGCGCTATGACTGCTTGTCTTTTAAA
1 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * * * *
15682 TTCCAAAAGTGTCGACACTTATAATAAAGTATAGACAATTTCAACATATCCAGTAGCTCTTTACC
66 TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACC
* * * *
15747 AGTTTTGTCATTTTGAGACCGATTTTATTATATTTTTACCTGTTATATTTTT
131 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
*
15799 AAGTGTCGATATA-TTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
1 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* *
15863 TTCTAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAACGCTTTACC
66 TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACC
* * * *
15928 GGTTTGGTCATTTTGAGACCGATTTTGTCATATTTTTACCTGTTATATTGCT
131 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
*
15980 ATG-GATCGATACATTTTT
1 AAGTG-TCGATACATTTTT
15998 ATTTGTATCG
Statistics
Matches: 678, Mismatches: 59, Indels: 12
0.91 0.08 0.02
Matches are distributed among these distances:
180 169 0.25
181 164 0.24
182 344 0.51
183 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.42
Consensus pattern (182 bp):
AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
TTCCAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACC
GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTT
Found at i:15746 original size:362 final size:362
Alignment explanation
Indices: 15073--15997 Score: 1424
Period size: 362 Copynumber: 2.5 Consensus size: 362
15063 ACAATAACCC
* * * *
15073 AAGTGTCGATACATTTTTTTAAAGTATCGACACTTTATAGACGCTATTACTGCTTGTCTTTTGAA
1 AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * * * *
15138 TTCCAAAAGTATCGATACTTATAATAAAATTTTGACACTTTCAACATATCTGGTGGCGCTTTACC
66 TTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCGCTTTACC
*
15203 GGTTTTGTCATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATAGTTAAGTGTCGATACA
131 GGTTTTG--ATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTAAGTGTCGATACA
* * * *
15268 TTTTTTTAAAGTATCGACACTTTTTAGGCGCTATTACTGTTTGTCTTTTAAATTCCAAAAATGTC
194 TTTTTTTAAAGTATCGACACTTTATAAGCGCTATGACTGCTTGTCTTTTAAATTCCAAAAATGTC
* * * * * *
15333 GATACTTATAATAAAGTATCGACACTAATAACATATCCGGTGGCGCTTTACCGGTTTTGTCATTT
259 GACACTTATAATAAAGTATAGACAATAATAACATATCCAGTAGCGCTTTACCAGTTTTGTCATTT
*
15398 TGAGACCGGTTTTATCATATTTTCACCTGTTATATTTTT
324 TGAGACCGATTTTATCATATTTTCACCTGTTATATTTTT
*
15437 AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGTGCTATGACTGCTTGTCTTTTAAA
1 AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * *
15502 TTCCAAAAGTGTCGACACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCTCTTTATC
66 TTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCGCTTTACC
*
15567 GGTTTTGAATTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTAAGTGTCGATACATT
131 GGTTTTGATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTAAGTGTCGATACATT
*
15632 TTTTTAAAGTATCGACACTTTATAAGCGCTATGACTGCTTGTCTTTTAAATTCCAAAAGTGTCGA
196 TTTTTAAAGTATCGACACTTTATAAGCGCTATGACTGCTTGTCTTTTAAATTCCAAAAATGTCGA
* *
15697 CACTTATAATAAAGTATAGACAAT-TTCAACATATCCAGTAGCTCTTTACCAGTTTTGTCATTTT
261 CACTTATAATAAAGTATAGACAATAAT-AACATATCCAGTAGCGCTTTACCAGTTTTGTCATTTT
* *
15761 GAGACCGATTTTATTATATTTTTACCTGTTATATTTTT
325 GAGACCGATTTTATCATATTTTCACCTGTTATATTTTT
15799 AAGTGTCGATATA-TTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
1 AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
* * *
15863 TTCTAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAACGCTTTACC
66 TTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCGCTTTACC
* * * * *
15928 GGTTTGGTCATTTTGAGACCGATTTTGTCATATTTTTACCTGTTATATTGCTATG-GATCGATAC
131 GGTTT--TGATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTAAGTG-TCGATAC
15992 ATTTTT
193 ATTTTT
15998 ATTTGTATCG
Statistics
Matches: 513, Mismatches: 44, Indels: 9
0.91 0.08 0.02
Matches are distributed among these distances:
361 115 0.22
362 219 0.43
363 55 0.11
364 124 0.24
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.42
Consensus pattern (362 bp):
AAGTGTCGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATGACTGCTTGTCTTTTAAA
TTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATATCCGGTAGCGCTTTACC
GGTTTTGATTTTGAGACCGGTTTTATCATATTTTTACCTGTTATATTGTTAAGTGTCGATACATT
TTTTTAAAGTATCGACACTTTATAAGCGCTATGACTGCTTGTCTTTTAAATTCCAAAAATGTCGA
CACTTATAATAAAGTATAGACAATAATAACATATCCAGTAGCGCTTTACCAGTTTTGTCATTTTG
AGACCGATTTTATCATATTTTCACCTGTTATATTTTT
Found at i:18216 original size:12 final size:13
Alignment explanation
Indices: 18193--18225 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
18183 TGCCCCGATT
18193 ACCCGAATACCCG
1 ACCCGAATACCCG
18206 ACCCG-ATACCCG
1 ACCCGAATACCCG
18218 ACCC-AATA
1 ACCCGAATA
18226 AATATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.33, C:0.45, G:0.12, T:0.09
Consensus pattern (13 bp):
ACCCGAATACCCG
Found at i:18449 original size:31 final size:31
Alignment explanation
Indices: 18402--18523 Score: 100
Period size: 32 Copynumber: 3.8 Consensus size: 31
18392 CTGGTGACTT
* * * *
18402 CACTTCGCCGGTCGATCTTCCTTTCCCTCGC
1 CACTTCCCCGGCCGATCTTCCCTTCCCTAGC
*
18433 CACTTCCCCGGCCGATCTTCCCCTTCCCTAGT
1 CACTTCCCCGGCCGATCTT-CCCTTCCCTAGC
* ** *
18465 GACTTCTACGGCCGATCTTCCCCTTCCCTAGT
1 CACTTCCCCGGCCGATCTT-CCCTTCCCTAGC
* ** *
18497 GACTTCTACGACCGATCTTCCCCTTCC
1 CACTTCCCCGGCCGATCTT-CCCTTCC
18524 GAGTTCCGAC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 17 0.21
32 64 0.79
ACGTcount: A:0.11, C:0.45, G:0.14, T:0.30
Consensus pattern (31 bp):
CACTTCCCCGGCCGATCTTCCCTTCCCTAGC
Found at i:18470 original size:32 final size:32
Alignment explanation
Indices: 18441--18523 Score: 157
Period size: 32 Copynumber: 2.6 Consensus size: 32
18431 GCCACTTCCC
18441 CGGCCGATCTTCCCCTTCCCTAGTGACTTCTA
1 CGGCCGATCTTCCCCTTCCCTAGTGACTTCTA
18473 CGGCCGATCTTCCCCTTCCCTAGTGACTTCTA
1 CGGCCGATCTTCCCCTTCCCTAGTGACTTCTA
*
18505 CGACCGATCTTCCCCTTCC
1 CGGCCGATCTTCCCCTTCC
18524 GAGTTCCGAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.12, C:0.43, G:0.14, T:0.30
Consensus pattern (32 bp):
CGGCCGATCTTCCCCTTCCCTAGTGACTTCTA
Found at i:20107 original size:29 final size:29
Alignment explanation
Indices: 20075--20132 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
20065 TTGTTTAATC
20075 GGTTTCTAATTTGTATCTTGTATTTATTT
1 GGTTTCTAATTTGTATCTTGTATTTATTT
*
20104 GGTTTCTAATTTGTATGTTGTATTTATTT
1 GGTTTCTAATTTGTATCTTGTATTTATTT
20133 CAGTCTATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.05, G:0.16, T:0.62
Consensus pattern (29 bp):
GGTTTCTAATTTGTATCTTGTATTTATTT
Found at i:25758 original size:3 final size:3
Alignment explanation
Indices: 25750--25775 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25740 GTTATGTTAT
25750 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
25776 TTGGGGTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32208 original size:17 final size:17
Alignment explanation
Indices: 32186--32222 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
32176 TCATTTATCT
32186 TTCACATTAATCTATAC
1 TTCACATTAATCTATAC
32203 TTCACATTAATCTATAC
1 TTCACATTAATCTATAC
32220 TTC
1 TTC
32223 TGTTGGTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.43
Consensus pattern (17 bp):
TTCACATTAATCTATAC
Found at i:33151 original size:15 final size:15
Alignment explanation
Indices: 33131--33159 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33121 GTAGGAATGC
33131 CAATTAAGTTTGTCA
1 CAATTAAGTTTGTCA
33146 CAATTAAGTTTGTC
1 CAATTAAGTTTGTC
33160 TTCATTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
CAATTAAGTTTGTCA
Found at i:36287 original size:2 final size:2
Alignment explanation
Indices: 36280--36313 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
36270 TCAATCTACA
36280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36314 CGACATACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37419 original size:33 final size:31
Alignment explanation
Indices: 37382--37454 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 31
37372 GTGGTATGTT
*
37382 TATTTGTTTAATCGGTTTCTAATTTGTATATTG
1 TATTT-TTTAAT-GGTTTATAATTTGTATATTG
* *
37415 TATTTATT--TGGTTTATAATTTGTATGTTG
1 TATTTTTTAATGGTTTATAATTTGTATATTG
37444 TATTTATTTAA
1 TATTT-TTTAA
37455 GTCTATTGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
29 23 0.70
30 3 0.09
32 2 0.06
33 5 0.15
ACGTcount: A:0.23, C:0.03, G:0.14, T:0.60
Consensus pattern (31 bp):
TATTTTTTAATGGTTTATAATTTGTATATTG
Found at i:37427 original size:29 final size:29
Alignment explanation
Indices: 37395--37452 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
37385 TTGTTTAATC
*
37395 GGTTTCTAATTTGTATATTGTATTTATTT
1 GGTTTATAATTTGTATATTGTATTTATTT
*
37424 GGTTTATAATTTGTATGTTGTATTTATTT
1 GGTTTATAATTTGTATATTGTATTTATTT
37453 AAGTCTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.62
Consensus pattern (29 bp):
GGTTTATAATTTGTATATTGTATTTATTT
Found at i:40462 original size:29 final size:31
Alignment explanation
Indices: 40430--40499 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
40420 TTTAGATAGT
40430 GACCAAAATACAAAATTT-G-AAAGTTTAGA
1 GACCAAAATACAAAATTTAGAAAAGTTTAGA
* * * *
40459 GACCAAAGTATAAACTTTGAGAAAAGTTTAGG
1 GACCAAAATACAAAATTT-AGAAAAGTTTAGA
40491 GACCAAAAT
1 GACCAAAAT
40500 GGTAATTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 15 0.45
31 1 0.03
32 17 0.52
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (31 bp):
GACCAAAATACAAAATTTAGAAAAGTTTAGA
Found at i:50126 original size:30 final size:30
Alignment explanation
Indices: 50090--50150 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
50080 GTTATCTAAG
*
50090 ATAGACATTCGGTCAGGATACCACCAATTA
1 ATAGACATTCGATCAGGATACCACCAATTA
* *
50120 ATAGACATTCGATCAGTATACTACCAATTA
1 ATAGACATTCGATCAGGATACCACCAATTA
50150 A
1 A
50151 AGATTAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (30 bp):
ATAGACATTCGATCAGGATACCACCAATTA
Found at i:57440 original size:132 final size:132
Alignment explanation
Indices: 57203--57459 Score: 487
Period size: 132 Copynumber: 1.9 Consensus size: 132
57193 TCATAGGACG
*
57203 AGCTAGACTAGTATCACGCCCAGCCTACCTCGGTCATCCTACGGTTGGCTGATCGGTCTTATGTG
1 AGCTAGACGAGTATCACGCCCAGCCTACCTCGGTCATCCTACGGTTGGCTGATCGGTCTTATGTG
*
57268 CAACACGACAGCAGAATAGAAGACGTCATAGTAAAGGTGGATAAATTCGTATTTCCAGTATTTAT
66 CAACACGACAACAGAATAGAAGACGTCATAGTAAAGGTGGATAAATTCGTATTTCCAGTATTTAT
57333 GA
131 GA
57335 AGCTAGACGAGTATCACGCCCAGCCTACCTCGGTCATCCTACGGTTGGCTGATCGGTCTTATGTG
1 AGCTAGACGAGTATCACGCCCAGCCTACCTCGGTCATCCTACGGTTGGCTGATCGGTCTTATGTG
*
57400 CAACCCGACAACAGAATAGAAGACGTCATAGTAAAGGTGGATAAATTCGTATTTCCAGTA
66 CAACACGACAACAGAATAGAAGACGTCATAGTAAAGGTGGATAAATTCGTATTTCCAGTA
57460 GATTTTCTCA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 122 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (132 bp):
AGCTAGACGAGTATCACGCCCAGCCTACCTCGGTCATCCTACGGTTGGCTGATCGGTCTTATGTG
CAACACGACAACAGAATAGAAGACGTCATAGTAAAGGTGGATAAATTCGTATTTCCAGTATTTAT
GA
Found at i:58228 original size:31 final size:31
Alignment explanation
Indices: 58193--58262 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
58183 ATCAACCTTG
58193 AAGATAGCCATAACATTTCGATAGAACCCCA
1 AAGATAGCCATAACATTTCGATAGAACCCCA
*
58224 AAGATATCCATAACATTTCGATAGAACCCCA
1 AAGATAGCCATAACATTTCGATAGAACCCCA
58255 AAGATAGC
1 AAGATAGC
58263 TCAACCCGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.43, C:0.24, G:0.13, T:0.20
Consensus pattern (31 bp):
AAGATAGCCATAACATTTCGATAGAACCCCA
Done.