genome.fa.s4341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004341.1 Hibiscus syriacus cultivar Beakdansim tig00009513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119465

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2200--2337	70	2.0	69	91	1	222	50	15	7	26	1.71
3003--3054	20	2.6	20	72	6	52	25	23	21	30	1.99
3813--3840	2	14.0	2	100	0	56	50	0	0	50	1.00
3970--4529	81	7.0	81	86	5	760	28	22	11	37	1.90
3970--4529	240	2.3	240	87	4	795	28	22	11	37	1.90
4480--4735	68	3.8	68	92	0	413	28	23	14	33	1.94
4937--5094	55	2.9	55	85	2	192	31	23	11	34	1.90
5422--5646	95	2.4	95	77	7	224	25	21	16	36	1.93
16907--16980	31	2.4	31	86	0	103	37	10	14	36	1.82
17238--17268	2	15.5	2	100	0	62	48	0	0	51	1.00
17957--18096	70	2.0	70	88	0	208	50	14	8	26	1.71
18809--18853	20	2.2	20	88	0	63	28	24	17	28	1.97
26809--26882	31	2.4	31	86	0	103	37	10	14	36	1.82
27859--27991	70	1.9	70	93	0	230	48	15	8	27	1.74
28703--28747	20	2.2	20	92	0	72	28	26	15	28	1.96
36695--36768	31	2.4	31	86	0	103	37	10	14	36	1.82
37738--37877	70	2.0	70	92	0	235	50	15	7	27	1.71
38564--38632	20	3.4	20	74	6	68	30	27	14	27	1.95
48794--48848	26	2.2	25	86	3	74	34	30	14	20	1.92
50158--50216	7	8.0	7	74	22	50	44	0	0	55	0.99
50233--50276	20	2.2	20	84	8	54	40	2	4	52	1.34
50822--50873	24	2.2	24	100	0	104	38	19	0	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50894--50933	20	2.0	20	90	9	64	30	17	22	30	1.97
50976--51044	20	3.5	19	82	5	75	37	23	7	31	1.82
52325--52383	23	2.6	23	97	0	109	27	11	0	61	1.31
52401--52446	19	2.4	19	85	7	58	32	10	6	50	1.63
53303--53374	33	2.2	33	84	2	90	23	27	13	34	1.93
53814--53861	20	2.4	20	92	0	78	37	20	8	33	1.83
63396--63429	16	2.1	17	88	5	52	20	5	29	44	1.75
65028--65073	16	2.8	17	77	9	51	63	0	6	30	1.20
65062--65122	24	2.5	25	77	20	67	59	8	1	31	1.37
66315--66376	30	2.1	30	96	0	115	25	32	32	9	1.88
72739--72770	2	16.0	2	100	0	64	50	0	0	50	1.00
82490--82576	5	17.4	5	80	13	99	57	0	0	42	0.98
83053--83696	106	6.0	106	88	1	887	23	19	23	33	1.97
84703--84727	11	2.3	11	100	0	50	0	8	8	84	0.79
84713--84856	78	1.9	77	88	4	218	11	18	13	56	1.65
96131--96176	11	4.2	11	89	8	67	54	0	0	45	0.99
98571--98632	31	2.0	31	87	0	88	40	11	12	35	1.80
98906--98932	2	13.5	2	100	0	54	48	0	0	51	1.00
99623--99762	70	2.0	70	92	0	235	50	15	7	27	1.71
100443--100495	20	2.6	21	72	3	54	24	24	20	30	1.99
101261--101293	2	16.5	2	100	0	66	48	0	0	51	1.00
101287--101326	20	2.0	21	90	5	64	32	27	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101425--101989	81	7.0	80	86	3	738	28	22	11	37	1.89
101425--101989	162	3.5	162	88	3	814	28	22	11	37	1.89
101425--101989	243	2.3	243	88	2	821	28	22	11	37	1.89
101940--102194	68	3.8	68	92	1	422	27	24	14	33	1.94
102404--102544	54	2.6	54	84	5	171	31	21	12	34	1.90
102986--103037	22	2.5	22	81	6	63	26	19	17	36	1.94
102889--103113	95	2.4	95	79	4	240	24	21	16	37	1.93
114296--114367	31	2.3	31	85	0	99	38	11	13	36	1.81
115323--115455	70	1.9	70	92	0	221	50	14	8	27	1.71

Tables:   1

The End!