genome.fa.s4343.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004343.1 Hibiscus syriacus cultivar Beakdansim tig00009516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87892

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630--663	2	17.0	2	100	0	68	50	0	0	50	1.00
8368--8401	16	2.1	16	88	0	50	61	14	2	20	1.46
8637--8669	15	2.1	16	88	5	50	27	0	24	48	1.51
10559--10602	20	2.3	19	84	7	54	25	22	11	40	1.87
10567--10610	20	2.2	20	95	0	79	25	22	9	43	1.82
23663--23707	21	2.1	21	84	8	56	20	68	2	8	1.27
23758--23819	24	2.6	24	81	0	70	12	66	6	14	1.44
23758--23823	18	3.7	18	75	0	60	13	65	6	15	1.45
25755--25782	2	14.0	2	100	0	56	50	0	0	50	1.00
35537--35561	13	1.9	13	100	0	50	52	16	16	16	1.76
37266--37305	12	3.3	12	89	0	62	45	0	55	0	0.99
59049--59232	60	3.1	59	77	4	190	18	12	40	28	1.87
64411--64459	17	2.9	17	96	0	89	48	30	0	20	1.50
64411--64458	8	5.8	8	78	9	51	50	29	0	20	1.49
66820--66871	20	2.6	20	100	0	104	38	17	21	23	1.93
67430--67470	5	7.6	5	97	2	55	0	19	53	26	1.45
67433--67492	6	10.5	6	94	1	90	0	18	51	30	1.46
67578--67632	21	2.7	19	78	15	65	32	23	21	21	1.98
67578--67632	23	2.7	19	74	17	56	32	23	21	21	1.98
67623--67926	41	7.4	41	93	0	520	24	22	20	32	1.97
67628--67946	21	15.6	20	66	19	124	24	22	21	32	1.98
68412--68721	43	7.2	43	79	7	267	33	20	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68440--68721	86	3.3	86	79	7	297	32	20	21	24	1.98
68440--68721	128	2.2	129	80	5	320	32	20	21	24	1.98
72346--72389	21	2.2	20	84	12	54	27	0	38	34	1.57
72491--72913	41	10.3	41	80	4	404	34	18	18	27	1.95
72491--72898	124	3.3	125	83	1	491	34	18	19	28	1.95
72481--72913	165	2.6	167	84	5	515	34	18	18	27	1.95
74353--74472	35	3.3	36	89	5	181	44	19	5	31	1.72
74404--74464	21	3.2	21	65	29	64	42	21	4	31	1.74
74355--74499	35	4.1	36	83	11	142	42	18	6	33	1.75
78996--79056	21	3.2	21	65	29	64	42	21	4	31	1.74
78957--79057	35	2.9	35	93	1	166	44	19	4	30	1.72
78964--79091	35	3.6	36	85	8	131	41	18	7	32	1.78

Tables:   1

The End!