genome.fa.s4344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004344.1 Hibiscus syriacus cultivar Beakdansim tig00009517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127878

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314--366	25	2.2	25	86	6	74	26	33	0	39	1.57
2543--2603	20	3.0	21	75	15	74	11	27	34	26	1.91
6393--6434	21	2.0	21	86	9	59	35	11	2	50	1.52
12884--12962	36	2.2	37	88	8	119	31	10	8	49	1.67
16641--16687	21	2.3	21	81	3	60	25	6	2	65	1.27
18833--18871	19	2.1	19	100	0	78	15	30	20	33	1.94
23057--23135	20	4.0	20	91	0	131	50	17	15	16	1.78
23142--23204	20	3.2	20	88	2	92	12	15	23	47	1.80
23152--23208	20	2.8	20	91	0	96	12	15	21	50	1.76
23145--23215	20	3.5	20	84	0	88	15	14	19	50	1.77
24633--24689	26	2.2	26	96	0	105	28	29	24	17	1.97
24853--24902	21	2.4	21	79	0	64	22	12	30	36	1.90
24919--25015	21	4.6	21	69	7	63	21	11	32	34	1.89
24980--25028	21	2.3	21	79	6	55	20	14	28	36	1.92
25311--25385	21	3.6	21	82	7	89	22	33	20	24	1.97
27202--27237	18	2.0	18	94	0	63	16	2	25	55	1.55
27902--27970	34	2.1	34	83	5	88	21	30	14	33	1.93
28338--28430	20	4.7	20	95	0	159	32	20	29	18	1.96
28608--28668	31	2.0	30	93	3	104	44	18	6	31	1.75
30701--30734	12	2.8	12	90	0	50	14	0	29	55	1.40
31499--31585	20	4.4	20	73	15	74	35	10	24	29	1.88
31530--31608	40	2.0	40	87	5	115	36	8	21	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31630--31750	20	6.0	20	67	16	70	24	15	23	36	1.94
32196--32280	30	2.8	30	92	0	134	24	17	12	44	1.84
33701--33762	3	20.7	3	83	0	61	38	20	33	6	1.79
33694--33762	21	3.0	23	81	12	88	39	18	34	7	1.79
33701--33764	21	3.0	21	88	0	92	37	20	34	7	1.81
33779--33825	9	5.2	9	89	0	76	53	2	44	0	1.12
42791--42907	60	2.0	60	87	3	173	41	3	21	33	1.70
42804--42893	29	3.0	30	66	11	76	42	3	21	33	1.69
49432--49510	40	2.0	40	100	0	158	37	7	6	48	1.57
49567--49722	3	48.3	3	75	15	125	61	12	25	0	1.35
49567--49724	23	6.9	23	81	9	114	61	12	25	0	1.36
49573--49726	54	2.9	54	92	3	249	60	14	24	0	1.39
49604--49726	23	5.0	23	83	14	165	60	13	25	0	1.39
49729--49826	48	2.0	49	86	11	141	25	12	9	53	1.68
50419--50453	2	17.5	2	100	0	70	51	0	0	48	1.00
51033--51144	34	3.2	34	69	28	101	10	23	38	27	1.88
55098--55122	9	2.8	9	100	0	50	88	0	0	12	0.53
55735--55786	18	2.8	19	85	5	72	57	0	1	40	1.10
60512--60540	3	9.7	3	100	0	58	68	31	0	0	0.89
60836--61011	24	7.5	24	71	8	121	55	18	15	10	1.68
60875--61026	10	13.5	10	69	20	79	56	18	13	11	1.66
60837--61026	47	4.1	47	81	4	201	56	17	14	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61223--61269	14	3.4	14	84	0	58	65	10	10	12	1.46
62003--62079	37	2.1	37	83	9	95	48	1	2	48	1.23
63154--63212	3	18.3	3	83	16	66	32	0	0	67	0.91
63153--63212	10	6.1	10	83	16	81	31	0	0	68	0.90
63155--63212	13	4.1	14	85	14	75	32	0	0	67	0.91
63153--63220	16	4.5	15	82	12	77	30	0	1	67	0.99
63979--64034	20	2.8	19	69	26	53	7	48	33	10	1.65
66947--67008	32	2.0	32	96	3	117	14	14	9	61	1.57
68826--68868	14	3.0	14	79	3	50	72	4	20	2	1.14
70044--70081	4	10.0	4	83	11	53	50	23	0	26	1.50
70032--70076	16	2.8	16	83	6	56	51	26	0	22	1.49
70627--70744	36	3.3	36	82	8	150	34	16	12	36	1.86
70627--70761	71	1.9	72	83	4	175	33	19	14	33	1.91
70847--70928	36	2.3	36	78	4	94	36	19	12	31	1.89
70902--71140	105	2.3	102	83	7	288	30	20	11	36	1.88
71109--71203	34	2.8	33	80	4	109	33	17	12	35	1.88
71457--71555	29	3.5	29	90	4	157	29	10	15	45	1.78
71446--71672	28	7.8	28	76	12	183	28	11	14	45	1.79
71519--71739	92	2.4	93	87	4	304	29	10	13	45	1.78
71617--71843	67	3.5	64	83	5	251	30	10	12	45	1.76
71888--72111	120	1.9	119	81	8	276	30	14	12	42	1.83
72009--72133	64	2.0	63	88	1	187	31	14	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72976--73217	40	5.7	42	73	9	165	25	30	19	23	1.98
73069--73263	46	4.4	46	71	18	171	25	28	20	26	1.99
72986--73300	129	2.4	129	94	0	540	25	30	19	24	1.98
73493--73549	3	17.3	3	83	16	69	31	0	0	68	0.90
73492--73549	10	6.1	10	82	17	79	31	0	0	68	0.89
73493--73549	13	4.3	12	81	18	69	31	0	0	68	0.90
73496--73557	13	4.4	14	80	15	67	30	0	1	67	1.00
80029--80105	31	2.5	31	85	4	102	19	16	15	48	1.82
82566--82615	25	2.0	25	88	0	73	14	14	14	58	1.65
83117--83148	3	10.7	3	100	0	64	34	0	0	65	0.93
83444--83500	27	2.0	26	83	12	69	42	3	1	52	1.28
83490--83591	50	2.0	49	80	10	109	47	0	1	50	1.12
83558--83615	29	2.0	29	83	6	73	43	1	1	53	1.21
83717--83796	22	3.7	22	69	15	69	48	2	3	45	1.33
84472--84519	21	2.3	21	81	0	60	45	2	8	43	1.45
85186--85242	28	2.0	28	83	6	71	52	5	14	28	1.62
85433--85754	162	2.0	162	96	0	599	23	20	14	41	1.89
89824--89877	23	2.3	23	80	0	72	27	5	11	55	1.57
89874--89921	22	2.2	22	88	0	69	16	6	20	56	1.62
90134--90179	24	1.9	24	81	0	56	54	17	6	21	1.65
106285--106354	34	2.1	34	94	0	122	27	5	24	42	1.77
115417--115466	22	2.2	22	85	3	64	50	20	2	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115521--115551	2	15.5	2	100	0	62	51	0	0	48	1.00
116005--116086	43	1.9	43	87	0	119	24	15	7	52	1.68
116092--116292	44	4.6	43	74	10	178	26	21	5	46	1.74
117062--117131	2	35.0	2	100	0	140	50	0	0	50	1.00
117191--117248	29	2.0	29	83	6	73	58	8	0	32	1.28
117796--117832	16	2.2	17	95	4	67	59	5	0	35	1.20

Tables:   1

The End!