Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004345.1 Hibiscus syriacus cultivar Beakdansim tig00009518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85137

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5419--5453
2
17.5
2
100
0
70
48
0
0
51
1.00
9283--9376
49
1.9
49
88
0
143
14
31
36
17
1.90
10517--10561
15
2.9
16
83
3
56
40
4
2
53
1.33
10791--10829
19
2.0
20
85
5
53
51
5
0
43
1.24
21173--21221
21
2.3
21
85
0
71
42
0
0
57
0.99
21712--21833
25
4.7
26
74
11
81
53
1
3
41
1.27
23611--23641
5
6.2
5
100
0
62
22
58
19
0
1.40
31275--31331
24
2.4
24
96
0
105
36
19
3
40
1.69
51835--51883
21
2.3
21
92
0
89
24
4
22
48
1.67
53799--53851
20
2.7
20
96
0
97
30
18
30
20
1.97
54027--54077
20
2.5
20
83
0
66
31
17
23
27
1.97
54947--55006
23
2.6
23
86
0
93
33
25
25
16
1.96
56525--56562
20
1.9
20
100
0
76
23
23
21
31
1.98
57850--57908
31
1.9
31
92
0
100
42
5
8
44
1.57
57932--58629
22
31.5
22
85
4
895
47
10
0
41
1.40
60237--60264
2
14.0
2
100
0
56
50
0
0
50
1.00
60479--60577
21
4.8
20
72
6
72
36
23
19
21
1.95
60545--60737
20
9.6
20
83
5
237
34
26
19
19
1.95
61116--61186
33
2.2
33
92
0
115
11
22
16
49
1.78
61266--61339
21
3.5
21
76
7
87
48
17
18
14
1.81
61278--61385
19
5.7
19
72
15
73
49
20
18
12
1.79
61381--61508
19
7.1
19
71
19
87
12
24
17
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61403--61459
14
3.7
14
72
20
51
10
22
22
43
1.84
61386--61467
33
2.5
33
97
0
155
10
21
19
47
1.80
61444--61508
21
3.1
21
82
4
96
12
26
13
47
1.78
61443--61506
20
3.2
20
82
4
92
14
25
14
46
1.81
63205--63289
19
4.4
19
86
1
116
10
18
25
44
1.82
63205--63289
38
2.2
39
91
2
136
10
18
25
44
1.82
63744--63810
21
3.2
21
70
8
64
25
34
19
20
1.96
65210--65245
14
2.6
14
95
0
63
33
0
22
44
1.53
65352--65435
19
4.6
19
78
16
106
44
19
23
13
1.85
65439--65680
19
13.7
19
77
17
272
14
21
17
45
1.85
65438--65702
105
2.5
106
87
8
391
15
21
17
45
1.85
65445--65680
72
3.4
71
82
11
283
14
21
17
46
1.84
65445--65694
33
7.2
33
74
16
238
14
22
18
46
1.84
65439--65702
52
5.0
52
87
9
367
14
21
17
45
1.85
68173--68219
24
2.0
24
87
8
69
38
21
14
25
1.92
68774--68813
22
1.9
21
90
10
64
27
7
40
25
1.82
68911--69139
20
11.4
20
85
1
235
19
17
25
37
1.94
69107--69204
21
4.8
20
75
10
81
21
19
21
37
1.94
69107--69205
42
2.4
43
77
11
100
21
19
22
37
1.94
70463--70491
3
9.7
3
100
0
58
68
0
0
31
0.89
70744--70816
3
23.7
3
86
10
103
0
36
0
63
0.95
72288--72348
6
10.2
6
96
0
104
31
49
16
3
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72346--72394
5
9.8
5
93
0
53
14
36
40
8
1.75
72346--72394
15
3.3
15
82
0
62
14
36
40
8
1.75
78223--78281
6
9.8
6
96
0
100
30
49
16
3
1.63
78279--78327
5
9.8
5
93
0
53
14
36
40
8
1.75
78279--78327
15
3.3
15
82
0
62
14
36
40
8
1.75
79155--79291
3
45.7
3
94
2
240
64
0
34
0
0.99
84835--84873
20
1.9
21
89
5
62
51
5
20
23
1.67

Tables:   1

The End!