genome.fa.s4346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004346.1 Hibiscus syriacus cultivar Beakdansim tig00009519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84133

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250--307	27	2.1	27	87	0	80	34	3	12	50	1.57
7517--7572	25	2.2	26	78	12	62	41	1	1	55	1.21
12691--12727	19	1.9	19	89	10	58	18	10	18	51	1.75
14991--15079	42	2.1	42	91	0	142	39	1	6	52	1.35
17655--17701	22	2.1	23	88	4	69	38	25	12	23	1.90
21010--21060	20	2.5	20	82	17	70	56	13	13	15	1.67
20802--21212	182	2.3	181	88	0	599	43	14	16	26	1.86
23440--23504	21	3.1	21	90	0	94	41	9	30	18	1.82
23538--23603	33	2.0	33	90	0	105	28	0	48	22	1.51
25386--25434	19	2.6	19	96	0	89	32	2	10	55	1.45
25569--26691	200	5.6	200	94	0	1933	35	15	17	31	1.91
25569--26691	401	2.8	401	95	0	1991	35	15	17	31	1.91
28173--28296	6	20.7	6	80	0	104	37	7	34	20	1.80
28173--28296	12	10.3	12	86	0	149	37	7	34	20	1.80
29510--30084	183	3.1	183	92	3	951	34	15	16	33	1.90
32933--33005	23	3.2	23	92	0	119	34	5	21	38	1.77
33361--33405	22	2.0	22	83	8	56	42	11	8	37	1.72
33423--33495	23	3.2	23	88	0	101	35	5	19	39	1.75
33915--33987	23	3.2	23	92	0	119	34	5	21	38	1.77
34406--34476	21	3.3	21	82	7	88	35	5	21	38	1.77
34401--34471	23	3.2	22	84	6	81	35	5	21	38	1.77
34887--34959	23	3.2	23	90	0	110	35	5	20	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32585--35846	490	6.7	490	97	0	6066	41	7	10	40	1.68
35375--35447	23	3.2	23	92	0	119	34	5	21	38	1.77
35799--35843	22	2.0	23	86	4	65	42	6	8	42	1.62
38871--38946	37	2.1	37	92	0	125	42	11	9	36	1.74
41257--41289	3	11.3	3	93	6	59	63	0	0	36	0.95
45127--45209	38	2.2	39	89	4	125	15	10	34	38	1.83
45312--45393	37	2.2	37	88	2	119	10	12	40	36	1.78
46113--46210	3	33.7	3	87	6	148	65	1	33	0	1.00
46746--46884	58	2.4	58	87	3	192	41	16	10	31	1.81
52464--52532	36	1.9	36	87	0	102	34	13	18	33	1.90
52422--52700	102	2.7	101	85	5	382	34	12	18	34	1.88
52628--52939	66	4.7	67	86	3	247	37	13	18	30	1.89
52669--52947	66	4.2	67	88	2	393	39	13	17	29	1.88
52770--52969	30	6.3	30	68	21	129	41	12	17	29	1.86
52694--52947	133	1.9	132	89	2	393	38	12	17	30	1.87
52793--52917	36	3.7	35	70	18	102	41	14	16	27	1.87
58548--58578	7	4.6	7	96	4	55	87	0	0	12	0.55
59757--59946	97	2.0	97	89	2	292	22	28	12	36	1.90
60891--60961	24	3.1	24	78	15	62	38	23	19	18	1.93
60919--61008	22	4.0	22	85	2	99	36	24	21	17	1.94
60990--61046	23	2.5	23	76	0	69	31	22	28	17	1.97
63597--63672	36	2.1	36	97	0	143	43	14	10	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72347--72382	2	18.0	2	100	0	72	50	0	0	50	1.00
75590--75706	61	1.9	60	89	1	180	29	24	18	27	1.98
80340--80380	20	2.1	20	95	4	75	43	0	12	43	1.41
80386--80531	40	3.7	39	81	8	143	41	5	6	46	1.54
80386--80576	40	4.8	39	77	13	135	43	4	7	43	1.54
80548--80719	70	2.6	70	80	14	188	48	3	6	41	1.45
80543--80720	24	7.9	21	72	19	103	47	3	6	42	1.46
80761--80801	12	3.2	13	83	13	50	34	0	0	65	0.93
82036--82090	25	2.2	26	83	3	67	23	7	1	67	1.26
82061--82109	16	3.1	15	78	18	55	24	2	0	73	0.94
82071--82121	20	2.6	19	75	9	57	27	0	1	70	0.98
82084--82114	16	1.9	16	100	0	62	29	0	0	70	0.87

Tables:   1

The End!