genome.fa.s4348.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004348.1 Hibiscus syriacus cultivar Beakdansim tig00009528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86549

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281--316	13	2.6	14	91	4	56	27	8	8	55	1.58
573--651	35	2.3	35	89	6	117	34	0	22	43	1.54
5093--5162	28	2.5	28	77	9	72	30	0	25	44	1.55
5113--5161	21	2.3	21	82	0	62	26	0	30	42	1.55
6453--6531	3	27.3	3	75	12	67	44	0	0	55	0.99
6453--6520	21	3.2	21	80	17	86	44	0	0	55	0.99
12713--12748	7	5.1	7	89	0	54	80	0	19	0	0.71
15007--15219	114	1.9	114	93	0	372	34	14	18	32	1.91
16071--16136	35	1.9	34	90	3	105	33	9	22	34	1.86
18374--19340	75	12.9	76	95	2	1708	22	19	21	36	1.95
19512--19598	15	5.8	15	74	17	65	44	0	0	55	0.99
19514--19598	18	4.3	20	79	18	99	43	0	0	56	0.99
19514--19586	21	3.3	22	88	9	105	42	0	0	57	0.98
19514--19598	21	4.2	20	80	17	104	43	0	0	56	0.99
19514--19586	3	23.3	3	85	2	83	42	0	0	57	0.98
26042--26087	12	3.6	13	82	11	60	43	0	0	56	0.99
27290--27319	2	15.0	2	100	0	60	50	0	0	50	1.00
31441--31497	21	2.8	21	76	10	55	64	3	15	15	1.42
38810--39643	105	7.9	105	98	0	1587	33	25	18	22	1.96
41209--41248	2	20.0	2	100	0	80	50	0	0	50	1.00
45635--45701	30	2.2	30	89	0	107	25	25	32	16	1.96
45685--45713	13	2.2	13	100	0	58	31	27	27	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45901--46006	49	2.1	50	92	1	178	27	2	14	55	1.53
46097--46448	177	2.0	177	98	0	686	50	9	13	26	1.72
46784--46845	30	2.1	30	93	0	106	17	37	22	22	1.94
47185--47218	10	3.4	10	87	0	50	55	0	0	44	0.99
49898--49977	31	2.6	31	80	5	83	37	8	20	33	1.83
49966--50050	37	2.3	37	83	0	107	43	11	18	25	1.84
50110--50177	29	2.3	30	87	2	93	41	5	20	32	1.76
50110--50179	30	2.4	29	87	2	95	40	5	21	32	1.77
49998--50309	163	1.9	162	81	6	371	40	10	20	28	1.86
50169--50231	32	2.0	32	93	0	108	44	11	22	22	1.84
50173--50267	36	2.8	35	82	6	97	42	11	21	25	1.86
50201--50883	101	6.7	102	76	11	463	39	11	19	30	1.86
50407--50897	36	14.1	36	73	13	341	39	11	19	29	1.86
50313--50658	140	2.5	137	86	6	466	39	10	17	31	1.85
50811--50973	37	4.6	37	70	16	148	38	12	19	30	1.89
50607--50973	102	3.6	102	88	2	497	38	11	19	30	1.88
50534--50973	102	4.3	101	84	6	490	38	11	19	30	1.86
58065--58201	42	3.2	42	78	7	150	48	5	19	27	1.70
58781--59141	179	2.0	179	98	0	695	37	10	10	41	1.74
62861--62889	13	2.2	13	100	0	58	13	24	27	34	1.93
63057--63109	2	26.5	2	96	0	97	0	47	1	50	1.12
65580--65605	7	3.7	7	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77714--77753	7	5.7	7	100	0	80	15	30	12	42	1.83
78236--78276	18	2.3	18	87	4	66	31	2	2	63	1.20
80044--80105	29	2.1	29	82	8	72	33	14	22	29	1.94
81729--81868	36	3.9	36	87	5	203	36	20	23	19	1.95
83188--83271	39	2.1	40	91	6	136	34	36	5	22	1.79
86079--86117	20	2.0	19	85	5	51	48	0	5	46	1.24

Tables:   1

The End!