Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004349.1 Hibiscus syriacus cultivar Beakdansim tig00009530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72724

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
274--576
88
3.5
86
74
10
262
31
19
9
39
1.84
288--615
42
7.6
43
73
11
208
30
21
10
38
1.87
283--576
126
2.3
130
83
11
374
30
20
9
39
1.84
1103--1157
22
2.6
22
88
5
78
25
27
16
30
1.96
1148--1186
19
2.1
19
85
0
51
30
23
10
35
1.88
1679--1734
23
2.4
24
88
8
73
26
32
3
37
1.74
1688--1734
23
2.0
23
95
0
85
29
27
4
38
1.76
6623--6664
21
2.0
22
85
4
59
40
19
2
38
1.64
7303--7540
45
5.2
44
79
5
235
28
19
10
41
1.84
7321--7540
91
2.4
91
81
6
250
29
20
10
40
1.85
8173--8228
22
2.7
21
79
15
64
25
30
16
28
1.96
8125--8302
95
1.9
95
81
4
216
26
25
15
32
1.96
17168--17345
90
2.0
90
90
0
284
37
10
6
46
1.64
17308--17349
20
2.0
20
86
9
57
42
0
7
50
1.30
24054--24231
90
2.0
90
92
0
293
37
10
6
46
1.63
25588--25628
2
20.5
2
100
0
82
51
0
0
48
1.00
27039--27104
25
2.6
25
85
0
87
21
22
34
21
1.96
27282--27323
3
14.0
3
90
9
68
66
0
2
30
1.04
28175--28206
16
2.0
16
100
0
64
43
6
12
37
1.68
29347--29432
37
2.4
36
88
3
120
19
22
25
32
1.97
36520--36554
15
2.3
15
95
0
61
42
22
5
28
1.76
40981--41046
24
2.8
24
83
0
87
53
18
9
19
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40983--41072
24
3.7
25
77
11
80
50
17
11
21
1.77
41030--41090
24
2.5
24
82
10
72
49
14
9
26
1.75
49751--49953
105
1.9
105
83
0
262
38
22
15
23
1.92
54992--55193
105
1.9
105
83
0
260
40
21
14
23
1.91
58410--58527
30
3.7
30
68
18
85
28
16
14
40
1.87
58382--58563
67
2.7
67
89
0
276
26
17
14
40
1.89
60271--60306
12
3.1
12
88
4
56
33
0
2
63
1.08
60352--60385
17
1.9
18
88
5
52
20
8
2
67
1.31
66441--66483
2
21.5
2
100
0
86
48
0
0
51
1.00
67821--67861
20
2.0
20
86
9
57
17
2
2
78
0.98
67893--67943
10
4.9
10
76
9
57
17
1
0
80
0.81
67885--67973
40
2.3
39
81
14
103
20
4
0
75
0.98
67822--67945
49
2.5
49
75
8
128
21
4
1
72
1.10
68156--68193
11
3.6
11
86
13
53
5
7
0
86
0.69
68306--68364
24
2.5
24
83
5
66
27
3
0
69
1.04

Tables:   1

The End!