genome.fa.s4350.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004350.1 Hibiscus syriacus cultivar Beakdansim tig00009532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72218

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3338--3385	23	2.1	23	100	0	96	39	27	8	25	1.84
3670--3724	23	2.5	23	82	8	71	32	29	20	18	1.96
8561--8663	36	2.9	36	94	0	179	25	15	15	43	1.86
9899--9947	21	2.6	18	87	9	62	28	20	24	26	1.99
13903--13978	29	2.7	28	71	13	66	67	3	1	27	1.17
15308--15376	3	23.0	3	80	11	70	57	0	2	39	1.13
15316--15384	12	5.6	12	74	17	61	59	0	2	37	1.12
15310--15388	15	5.5	15	72	15	60	60	0	2	36	1.10
15309--15384	18	4.3	17	70	20	57	60	0	2	36	1.11
15624--15682	17	3.4	17	70	25	59	15	23	11	49	1.77
15727--16145	227	1.8	228	89	2	664	27	20	14	37	1.91
15727--16146	113	3.7	113	86	3	585	27	20	14	38	1.91
16083--16184	40	2.5	40	93	3	170	17	21	8	51	1.72
15854--16413	267	2.1	267	90	1	872	26	19	13	41	1.88
15970--16300	154	2.2	153	92	0	536	24	19	12	42	1.86
16123--16558	225	1.9	228	95	2	790	27	17	14	41	1.88
16123--16558	113	3.9	114	96	1	790	27	17	14	41	1.88
16946--17000	22	2.5	22	87	0	83	36	14	14	34	1.87
19539--19765	115	2.0	114	89	2	348	30	20	14	33	1.93
24802--24842	20	2.0	20	85	0	55	58	9	12	19	1.61
24902--24943	7	6.0	7	78	10	50	54	14	16	14	1.71
27313--27388	29	2.7	28	71	13	66	67	3	1	27	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28726--28808	3	28.0	3	85	11	118	62	0	1	36	1.03
28804--28829	4	6.5	4	100	0	52	76	0	0	23	0.78
28727--28828	36	2.8	36	84	12	129	65	0	0	33	0.99
40454--40544	42	2.2	42	84	4	121	32	16	24	26	1.96
43316--43340	13	1.9	13	100	0	50	24	28	0	48	1.52
45288--45351	20	3.2	20	82	4	67	12	23	43	20	1.85
45316--45351	10	3.6	10	92	7	56	11	25	50	13	1.75
47315--47440	63	2.0	63	87	3	182	36	7	11	44	1.69
54887--54917	14	2.2	14	94	0	53	12	38	0	48	1.42
60506--60765	45	5.8	45	92	1	416	30	21	6	40	1.79
60839--60918	40	2.0	40	85	0	106	22	25	25	27	2.00
67140--67199	20	2.9	21	85	5	68	41	20	36	1	1.62
67148--67199	20	2.5	21	87	6	79	40	21	36	1	1.64
67544--67692	44	3.4	44	87	0	226	30	22	16	30	1.96
67534--67766	44	5.3	43	79	5	198	33	24	15	27	1.95
67544--67766	88	2.5	88	81	2	234	31	24	15	28	1.95
68262--68408	78	1.9	78	84	0	195	27	13	19	40	1.89
70741--70850	40	2.8	40	82	0	139	43	10	12	32	1.78
70741--70845	20	5.2	20	70	0	75	42	11	12	33	1.78
70725--70845	60	2.0	60	83	0	152	42	11	11	33	1.77
71767--71805	20	2.1	19	86	13	55	20	2	28	48	1.62

Tables:   1

The End!