genome.fa.s4352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004352.1 Hibiscus syriacus cultivar Beakdansim tig00009538_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109603

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5508--5571	32	2.0	32	93	0	110	26	6	25	42	1.78
14677--14737	2	30.5	2	100	0	122	50	0	0	49	1.00
15183--15264	43	1.9	43	87	0	119	24	15	7	52	1.68
15270--15466	44	4.6	43	75	9	174	26	21	5	46	1.73
15270--15455	86	2.2	87	81	7	240	26	22	5	45	1.75
16224--16284	2	31.0	2	96	3	115	49	0	0	50	1.00
16947--16990	16	2.9	16	87	12	67	59	4	0	36	1.18
32507--32729	54	4.1	54	85	4	263	26	11	28	34	1.91
34501--34584	42	2.0	42	97	0	159	33	17	7	41	1.77
40606--40672	33	2.0	33	82	5	82	28	11	4	55	1.56
48223--48257	2	17.5	2	93	0	61	51	2	0	45	1.16
48834--48885	6	8.7	6	82	0	68	76	0	3	19	0.93
49633--49669	3	12.3	3	100	0	74	32	0	0	67	0.91
50413--50667	139	1.8	139	98	0	492	29	12	16	41	1.86
51522--51596	20	3.7	20	70	10	62	36	24	20	20	1.95
51560--51657	21	4.7	21	71	15	78	36	21	21	20	1.95
51625--51880	20	12.6	20	70	11	110	39	23	17	19	1.92
51625--51879	41	6.3	41	78	8	195	39	23	17	19	1.92
51763--51877	61	1.9	61	92	1	196	40	24	18	17	1.91
51705--51879	81	2.2	81	85	4	228	40	23	17	19	1.91
51949--52001	21	2.5	21	84	0	70	20	26	18	33	1.96
51991--52056	20	3.3	20	87	4	98	39	22	18	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52006--52066	20	3.0	20	76	4	61	37	21	19	21	1.94
52918--52971	24	2.2	24	90	0	81	22	18	18	40	1.91
55408--55496	20	4.4	21	84	5	105	37	23	20	19	1.94
55408--55496	40	2.2	40	86	4	126	37	23	20	19	1.94
55494--55585	33	2.7	34	84	3	114	16	22	18	42	1.89
55687--55723	14	2.6	14	86	0	56	48	21	0	29	1.50
57078--57189	42	2.7	42	76	5	111	22	18	37	21	1.94
57669--57737	20	3.5	20	95	0	120	39	23	20	17	1.92
57771--57813	19	2.3	19	87	0	59	13	16	25	44	1.85
57780--57905	19	6.9	19	78	14	122	10	17	21	50	1.75
57785--57884	33	2.9	35	79	15	109	10	17	23	50	1.75
57780--57905	52	2.3	54	82	9	141	10	17	21	50	1.75
57828--57882	17	3.1	17	84	5	74	10	20	20	49	1.78
57819--57921	19	5.3	21	79	12	80	13	17	20	48	1.81
57969--58348	94	4.1	94	94	1	647	46	17	12	22	1.82
60057--60108	20	2.6	20	82	11	79	40	21	25	13	1.89
60044--60198	33	4.5	35	85	5	169	45	20	21	12	1.84
60093--60186	14	6.0	14	68	22	53	44	21	22	11	1.84
60073--60198	33	3.8	33	90	1	198	43	21	22	12	1.86
60230--60301	20	3.5	20	83	5	83	12	15	19	52	1.74
60859--61092	20	11.6	20	75	15	187	20	18	24	36	1.95
60902--61031	61	2.2	60	95	1	233	21	19	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60859--61054	81	2.4	80	80	9	204	21	18	24	35	1.96
60859--61092	101	2.3	101	84	4	294	20	18	24	36	1.95
60902--61098	61	3.3	61	84	7	215	20	19	23	36	1.95
61142--61195	20	2.7	19	69	8	54	18	18	29	33	1.95
63552--63580	15	1.9	15	100	0	58	34	20	37	6	1.80
64599--64645	16	3.2	16	66	27	50	34	25	10	29	1.90
64592--64645	27	2.0	27	100	0	108	37	25	11	25	1.89
65037--65161	65	1.9	66	86	1	180	42	5	20	31	1.75
66928--66970	20	2.2	19	83	4	50	25	9	13	51	1.71
69187--69221	18	1.9	18	94	0	61	31	40	22	5	1.78
70293--70507	107	2.0	107	86	3	299	43	9	18	28	1.82
72572--72614	18	2.3	18	84	11	52	11	0	9	79	0.95
73830--74417	294	2.0	293	97	1	1099	30	12	18	38	1.89
78243--78281	21	1.9	20	84	5	51	28	15	5	51	1.64
81452--81482	12	2.6	12	100	0	62	35	0	9	54	1.33
86317--86376	31	1.9	31	90	6	95	48	3	10	38	1.53
87099--87137	17	2.4	17	87	8	55	43	12	2	41	1.56
90192--90242	23	2.4	21	81	18	61	39	3	0	56	1.18
90971--91012	22	1.9	22	95	0	75	45	0	0	54	0.99
93240--93269	15	2.0	15	100	0	60	20	13	33	33	1.91
94905--94959	21	2.6	21	88	2	74	56	0	1	41	1.10
98732--98949	117	1.9	117	92	0	364	22	21	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98893--99018	63	2.0	63	95	0	225	26	19	15	39	1.90
99985--101829	235	7.9	235	85	6	2344	40	21	14	24	1.90
99985--101743	691	2.5	694	87	6	2398	40	21	14	24	1.90
102564--102616	26	2.0	27	82	14	65	50	3	1	43	1.30
102577--102623	19	2.4	19	79	10	51	51	2	2	44	1.25
102550--102671	59	2.0	60	89	4	185	47	1	2	48	1.25
102579--102674	29	3.3	29	68	18	81	48	1	3	46	1.24
104860--104923	31	2.0	32	90	3	103	20	23	15	40	1.90
107361--107387	14	1.9	14	100	0	54	51	33	0	14	1.43

Tables:   1

The End!