Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004354.1 Hibiscus syriacus cultivar Beakdansim tig00009540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177989

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
263--315
22
2.5
22
93
3
90
30
28
18
22
1.98
4118--4184
30
2.2
31
89
2
100
28
8
10
52
1.66
4520--4577
26
2.3
26
85
8
77
36
3
1
58
1.25
10483--10540
23
2.6
24
84
10
70
56
0
0
43
0.99
10779--10866
43
2.1
42
95
2
158
38
11
17
32
1.85
12427--12453
14
1.9
14
100
0
54
55
0
0
44
0.99
12427--12458
10
3.1
11
86
13
50
53
0
0
46
1.00
12707--12731
4
6.2
4
100
0
50
48
0
0
52
1.00
13198--13273
36
2.1
36
85
7
100
47
1
3
47
1.29
14492--14555
30
2.1
30
82
5
76
34
3
0
62
1.11
15009--15077
31
2.2
31
76
0
75
24
11
14
49
1.77
18769--18800
14
2.1
16
88
11
50
15
15
18
50
1.79
19043--19092
22
2.2
24
78
10
59
4
6
24
66
1.32
23427--23830
171
2.3
172
86
3
555
25
28
18
27
1.98
26984--27097
59
1.9
59
85
8
160
40
7
9
42
1.67
27360--27406
22
2.3
21
85
10
62
29
8
14
46
1.74
27943--28001
29
2.0
29
100
0
118
23
13
13
49
1.78
32628--32686
29
2.0
29
100
0
118
23
13
13
49
1.78
42870--42898
12
2.4
12
100
0
58
27
31
41
0
1.56
55281--55332
19
2.7
19
100
0
104
17
21
30
30
1.96
55213--55396
83
2.2
84
81
5
212
25
17
26
29
1.98
55362--55412
19
2.7
19
85
8
70
25
15
35
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55235--55399
83
2.0
83
85
5
226
25
16
27
30
1.96
55428--55483
20
2.8
20
97
0
103
21
19
33
25
1.97
60687--60746
30
2.0
30
96
0
111
43
18
23
15
1.87
62902--62971
29
2.3
30
83
9
81
60
10
1
28
1.38
64235--64276
16
2.9
14
80
16
50
26
14
2
57
1.50
64245--64276
16
2.0
16
93
0
55
21
12
3
62
1.43
70700--70738
16
2.4
16
95
0
69
20
58
0
20
1.39
74908--75065
60
2.7
60
86
3
194
42
5
20
31
1.75
75046--75084
19
2.1
19
85
9
53
48
0
12
38
1.42
80079--80152
26
2.8
26
78
17
73
45
1
4
48
1.29
80353--80405
26
2.0
27
85
10
74
54
0
5
39
1.24
85481--85546
10
6.8
9
72
16
51
18
25
25
30
1.98
85481--85539
20
2.9
21
80
7
77
18
25
23
32
1.97
85481--85539
10
5.9
10
74
18
52
18
25
23
32
1.97
85485--85542
30
2.0
28
83
16
73
17
24
25
32
1.96
85522--85574
19
2.8
20
82
5
58
18
28
28
24
1.98
85567--85627
17
3.3
17
77
20
68
19
47
21
11
1.81
85568--85620
22
2.4
22
96
0
97
20
50
20
7
1.72
92547--92646
10
10.4
9
74
12
74
18
26
26
30
1.98
92547--92646
19
5.2
18
75
9
74
18
26
26
30
1.98
97085--97114
2
14.5
2
93
6
51
50
0
3
46
1.18
97838--97871
16
2.1
17
88
5
52
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103400--103447
15
3.2
15
84
0
60
10
60
16
12
1.58
103704--103743
22
1.9
20
90
10
62
50
0
5
45
1.23
105280--105314
2
17.5
2
100
0
70
51
0
0
48
1.00
105477--105507
10
3.1
10
95
0
53
38
6
0
54
1.26
110412--110457
19
2.3
20
85
7
67
26
15
6
52
1.67
112476--112565
29
3.2
28
81
9
96
40
14
26
18
1.89
118606--118678
30
2.4
31
83
4
94
54
15
8
21
1.66
119493--119534
21
2.0
21
90
9
68
66
11
9
11
1.44
120459--120533
38
2.0
37
84
5
98
48
4
1
46
1.29
127192--127233
18
2.4
17
84
4
57
47
0
0
52
1.00
154003--154035
8
4.2
8
92
7
59
33
0
0
66
0.92
154003--154035
15
2.1
16
94
5
59
33
0
0
66
0.92
158154--158204
26
2.0
26
84
0
66
39
9
3
47
1.55
158440--158515
31
2.5
31
88
0
116
31
7
10
50
1.66
159481--159572
31
3.0
31
93
0
148
55
7
5
31
1.51
159858--159895
2
19.0
2
100
0
76
50
0
0
50
1.00
162998--163040
20
2.0
22
86
8
63
41
0
4
53
1.21
163327--163365
12
3.5
11
83
13
53
69
0
0
30
0.89
171696--171794
5
19.8
5
94
0
171
42
21
16
20
1.89

Tables:   1

The End!