Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004355.1 Hibiscus syriacus cultivar Beakdansim tig00009543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77783

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47--88
21
2.0
21
90
0
66
16
21
23
38
1.93
2585--2631
20
2.4
20
82
3
60
34
19
12
34
1.89
12666--12768
28
3.6
28
88
5
154
36
23
6
33
1.81
12771--12808
17
2.2
18
90
4
60
13
21
50
15
1.78
12814--12853
19
2.1
19
90
0
62
20
27
30
22
1.98
14495--14543
21
2.3
21
100
0
98
24
18
16
40
1.90
20494--20535
15
2.9
15
82
7
50
61
2
2
33
1.21
24065--24109
21
2.1
21
83
0
54
22
26
17
33
1.96
24099--24192
20
4.7
20
81
2
125
37
19
21
22
1.95
24099--24192
41
2.3
40
85
1
125
37
19
21
22
1.95
24099--24212
61
1.9
60
88
1
174
35
20
21
23
1.96
24759--24814
20
2.8
20
91
0
85
35
21
19
23
1.96
24838--24902
20
3.2
20
80
0
58
16
15
21
46
1.84
24874--24913
20
2.0
20
90
0
62
12
12
17
57
1.65
26785--26874
20
4.5
20
91
0
135
40
22
16
21
1.92
26921--27029
20
5.8
20
76
12
122
20
17
20
42
1.90
26902--27021
34
3.4
34
75
13
123
18
19
20
41
1.90
27503--27610
21
5.1
21
73
7
85
19
36
20
24
1.95
28973--29008
14
2.6
14
90
0
54
27
2
22
47
1.65
29121--29188
33
2.1
33
91
0
109
41
19
25
14
1.89
29195--29286
19
4.7
19
80
9
105
19
19
25
35
1.95
32220--32246
12
2.2
12
100
0
54
22
14
51
11
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32405--32494
20
4.4
20
76
8
101
25
20
16
37
1.93
32405--32498
41
2.3
41
87
1
127
25
21
15
37
1.93
32440--32505
20
3.2
20
75
10
71
21
24
15
39
1.91
32894--32954
32
1.9
31
83
3
77
49
8
1
40
1.42
34206--34288
32
2.6
31
81
3
94
42
7
4
45
1.53
34426--34508
32
2.6
31
81
3
94
42
7
4
45
1.53
46117--46151
15
2.2
16
90
5
54
71
11
0
17
1.14
50649--50684
2
18.0
2
100
0
72
50
0
0
50
1.00
53914--53957
21
2.1
21
86
0
61
29
20
20
29
1.98
57081--57123
4
10.8
4
82
0
50
39
25
6
27
1.81
57085--57124
8
5.0
8
87
0
62
37
25
10
27
1.88
57081--57124
16
2.8
16
89
0
70
38
25
9
27
1.86
58294--58325
2
16.0
2
100
0
64
50
0
0
50
1.00
66761--66796
18
2.0
18
100
0
72
33
27
16
22
1.95
67196--67226
16
1.9
16
93
0
53
54
6
32
6
1.51
74811--74842
8
4.0
8
95
0
55
0
59
0
40
0.97

Tables:   1

The End!