genome.fa.s4356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004356.1 Hibiscus syriacus cultivar Beakdansim tig00009544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120639

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341--1390	18	2.7	19	71	20	52	50	0	2	48	1.12
3136--3171	18	2.0	18	100	0	72	27	33	5	33	1.80
5591--5615	2	12.5	2	100	0	50	52	0	48	0	1.00
20045--20195	77	1.9	79	85	5	209	45	5	8	41	1.57
20936--20982	17	2.9	17	93	6	80	36	0	12	51	1.40
26003--26043	21	2.0	21	90	0	64	36	26	7	29	1.83
37828--37884	30	1.9	30	82	7	71	33	12	3	50	1.57
47292--47335	23	1.9	23	95	0	79	34	20	22	22	1.97
50127--50188	18	3.4	18	91	4	106	32	9	4	53	1.55
50129--50188	19	3.2	19	90	4	104	31	8	5	55	1.51
50189--50216	13	2.2	13	100	0	56	35	21	28	14	1.92
51680--51756	31	2.5	31	78	2	91	27	27	27	18	1.98
56351--56427	31	2.5	31	82	2	91	28	29	25	15	1.96
60680--60769	45	2.0	45	95	4	164	31	17	13	37	1.89
66799--68383	446	3.5	448	91	1	2408	29	14	12	42	1.83
68569--68606	19	2.0	19	94	0	67	28	13	10	47	1.76
69912--70365	230	2.0	225	87	3	649	34	21	7	35	1.82
74143--74185	22	1.9	23	86	13	63	48	9	2	39	1.48
74873--74941	26	2.8	24	82	14	70	27	4	0	68	1.09
74897--74959	21	2.9	21	86	9	74	34	1	0	63	1.04
74924--74959	19	1.9	18	94	5	63	44	2	0	52	1.15
75035--75122	44	2.1	41	83	14	108	23	5	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75067--75123	18	3.2	18	78	7	55	22	3	0	73	0.98
75104--75128	13	1.9	13	100	0	50	12	8	0	80	0.92
75227--75271	18	2.6	17	83	13	56	15	13	0	71	1.15
75225--75271	17	2.7	17	81	12	60	14	12	0	72	1.13
75305--75356	16	2.9	18	75	13	54	21	1	1	75	1.00
79398--79423	11	2.4	11	100	0	52	30	15	0	53	1.42
80003--80074	37	1.9	37	88	0	108	26	20	13	38	1.90
80090--80315	36	6.4	36	76	10	216	26	19	13	40	1.89
80009--80279	101	2.7	101	85	2	346	28	19	13	38	1.90
80110--80369	138	1.9	138	89	0	403	26	20	13	40	1.89
80273--80446	65	2.6	65	86	5	233	33	21	8	36	1.84
80273--80445	67	2.6	67	88	3	217	33	21	8	36	1.84
81120--81326	110	1.9	110	88	0	315	35	24	19	20	1.96
82298--82371	22	3.2	21	75	16	67	27	4	0	68	1.07
82433--82457	2	12.5	2	100	0	50	48	0	0	52	1.00
82447--82546	36	2.8	33	77	15	94	30	4	2	64	1.23
82516--82579	18	3.6	18	75	12	60	21	3	0	75	0.95
82680--82726	17	2.7	17	75	12	51	17	12	0	70	1.17
84247--84291	20	2.3	20	88	3	65	40	24	0	35	1.56
84707--84885	42	4.3	42	94	0	322	21	18	23	36	1.95
84701--84888	21	9.0	21	72	16	131	21	19	22	35	1.96
85677--85708	16	2.0	16	93	0	55	21	25	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91363--91398	18	1.9	19	88	5	56	27	8	22	41	1.82
97585--97622	20	1.9	20	94	0	67	26	0	7	65	1.19
99117--99186	33	2.1	33	86	0	95	21	30	15	32	1.94
99466--99519	23	2.5	22	82	8	74	20	22	33	24	1.97
99475--99518	23	1.9	23	95	0	79	18	25	31	25	1.97
99576--99641	33	1.9	35	87	6	100	25	22	27	24	2.00
101880--101949	20	3.8	20	81	14	73	25	24	28	21	1.99
101904--101932	15	1.9	15	100	0	58	31	27	20	20	1.98
101884--101949	33	1.9	34	87	6	98	25	24	27	22	2.00
101975--102023	22	2.2	22	85	7	64	28	18	30	22	1.97
101881--102094	99	2.2	96	79	9	218	26	20	25	27	1.99
102030--102096	22	3.0	22	73	4	71	25	19	23	31	1.98
111198--111535	72	4.7	72	83	0	336	42	14	29	13	1.84
111264--111566	144	2.1	144	81	2	349	44	13	29	13	1.81
111266--111566	72	4.2	72	80	7	297	44	13	28	13	1.82
111689--111792	51	2.0	51	90	3	165	29	14	34	21	1.93
113302--113598	140	2.1	139	85	3	393	43	13	14	28	1.82
113302--113688	140	2.8	138	82	3	359	43	12	14	29	1.83
113814--113879	15	4.6	14	69	14	53	57	7	7	27	1.53
116039--116419	116	3.3	115	80	7	391	25	20	14	38	1.92
116342--116405	20	3.2	20	71	20	62	25	21	12	40	1.88
116914--116952	17	2.4	17	91	4	62	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118965--119020	20	2.8	20	86	2	69	35	14	12	37	1.84

Tables:   1

The End!