genome.fa.s4357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004357.1 Hibiscus syriacus cultivar Beakdansim tig00009545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84337

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639--691	22	2.5	22	93	3	90	22	18	28	30	1.98
3549--3593	21	2.1	21	87	0	63	31	28	24	15	1.96
4574--4756	31	6.0	31	89	5	277	20	18	20	39	1.92
4574--4739	92	1.8	90	92	5	280	20	18	19	40	1.91
16437--16518	31	2.6	31	79	12	89	48	9	9	31	1.69
21834--21962	42	3.0	43	85	3	156	24	22	11	41	1.87
27489--27637	55	2.7	55	97	1	282	27	21	16	34	1.94
27483--27792	55	5.7	54	85	8	262	24	23	17	34	1.95
27768--28320	52	10.6	52	94	0	926	30	25	16	28	1.96
27902--28034	24	5.2	24	62	13	59	28	27	14	30	1.95
28186--28270	28	3.2	28	63	13	79	32	24	15	27	1.95
28316--28704	55	7.1	55	89	2	606	28	28	14	29	1.95
28316--28704	163	2.4	163	89	2	593	28	28	14	29	1.95
28313--28704	108	3.6	110	94	1	657	28	28	14	29	1.95
29975--30105	9	13.7	9	73	17	79	9	9	1	78	1.03
30014--30101	10	10.8	8	79	14	51	12	7	0	79	0.93
40114--40148	16	2.2	16	89	0	52	71	0	0	28	0.86
40124--40152	10	2.7	11	89	10	51	68	0	0	31	0.89
40484--40647	89	1.8	89	89	0	256	31	6	14	48	1.68
40973--41039	32	2.1	32	97	0	125	38	14	7	38	1.75
43039--43092	28	2.0	27	85	10	74	50	12	0	37	1.41
45366--45420	22	2.5	23	82	11	62	45	0	9	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46071--46109	14	2.6	14	88	8	51	38	5	2	53	1.37
46339--46435	22	4.5	22	75	16	76	51	1	0	47	1.07
46332--46418	33	2.5	36	81	10	92	50	1	0	48	1.08
46372--46419	11	4.2	12	75	21	50	45	0	0	54	0.99
46330--46427	42	2.3	43	74	6	103	51	1	0	47	1.07
46508--46605	21	4.4	21	69	13	63	52	1	0	46	1.07
46522--46629	35	3.5	31	74	15	91	53	2	0	43	1.15
54210--54280	20	3.6	19	73	5	52	30	30	12	25	1.93
54252--54294	21	2.1	21	82	4	52	39	30	9	20	1.84
54295--54587	21	14.0	21	77	11	221	18	24	23	33	1.97
54356--54425	20	3.5	20	70	18	63	15	21	22	40	1.91
54356--54447	41	2.2	41	94	0	157	16	19	25	39	1.92
55189--55276	21	4.1	21	86	2	131	28	20	27	23	1.99
55189--55276	43	2.1	42	89	2	131	28	20	27	23	1.99
55288--55379	41	2.2	41	86	0	121	41	22	17	18	1.90
55371--55440	21	3.3	21	97	0	131	31	24	25	18	1.98
55441--55506	20	3.2	21	74	6	55	24	10	31	33	1.89
57155--57312	20	7.7	21	69	9	67	37	23	18	20	1.94
57258--57529	20	13.4	20	75	9	158	38	24	18	19	1.93
57258--57529	41	6.7	41	86	5	331	38	24	18	19	1.93
58068--58158	20	4.6	20	80	9	105	50	20	17	10	1.76
58083--58162	41	2.0	40	87	2	115	50	20	20	10	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58193--58263	19	3.7	19	79	7	81	14	21	16	47	1.81
59958--60338	94	4.1	94	95	2	642	21	12	18	47	1.81
59958--60338	189	2.0	187	92	3	640	21	12	18	47	1.81
60454--60522	17	3.6	19	80	11	79	14	20	20	44	1.86
61448--61483	14	2.6	14	95	0	63	33	0	22	44	1.53
61601--61650	19	2.6	19	96	0	91	18	16	18	48	1.82
61655--61713	19	3.4	19	73	22	74	13	22	18	45	1.84
61663--61713	17	3.1	17	69	25	54	13	23	17	45	1.84
61820--61856	14	2.6	14	91	0	65	45	21	0	32	1.52
62338--62509	19	9.7	18	70	20	107	13	22	19	44	1.86
62340--62549	106	2.0	106	85	1	287	15	22	20	41	1.89
62342--62523	73	2.7	66	80	10	202	14	22	19	43	1.87
62342--62522	33	5.3	33	81	9	209	13	22	19	43	1.87
62515--62588	20	3.7	20	69	16	62	24	17	25	32	1.97
65050--65103	24	2.2	24	93	0	90	40	20	18	20	1.91
65050--65117	24	2.8	24	84	0	64	38	20	17	23	1.93
65967--66012	20	2.3	20	100	0	92	19	19	21	39	1.93
66009--66054	21	2.2	21	88	0	65	36	17	28	17	1.92
74821--75029	54	3.9	54	92	0	337	35	21	15	28	1.93
74821--75072	108	2.3	108	87	1	326	34	21	15	28	1.94
77435--77496	30	2.1	30	100	0	124	32	24	19	24	1.98
77721--77765	14	3.4	14	74	20	51	33	6	2	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82366--82463	28	3.3	30	82	7	110	32	25	17	24	1.97
82366--82463	29	3.3	29	81	7	99	32	25	17	24	1.97

Tables:   1

The End!