genome.fa.s4359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004359.1 Hibiscus syriacus cultivar Beakdansim tig00009548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81689

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6582--6617	18	2.0	18	100	0	72	33	27	16	22	1.95
7015--7045	16	1.9	16	93	0	53	54	6	32	6	1.51
14618--14653	8	4.5	8	96	0	63	0	58	0	41	0.98
21990--22038	16	3.1	16	90	0	80	8	10	22	59	1.56
31310--32855	30	51.2	30	82	2	1446	30	41	9	19	1.82
32439--32909	30	15.7	30	73	5	173	30	41	6	22	1.79
32842--32923	30	2.9	27	73	19	78	25	41	7	25	1.81
34860--34906	20	2.3	20	85	7	60	51	2	21	25	1.59
61938--61989	21	2.5	21	81	3	70	21	26	19	32	1.97
62018--62066	21	2.3	21	100	0	98	38	16	22	22	1.92
62057--62194	41	3.4	41	76	2	143	36	24	15	23	1.94
61979--62112	62	2.2	61	82	4	153	36	21	21	20	1.95
62102--62168	20	3.3	20	85	0	89	29	28	13	28	1.94
62361--62404	22	2.0	22	95	0	79	20	45	15	18	1.85
62652--62725	20	3.8	20	78	1	78	14	18	18	47	1.83
63389--63443	25	2.2	24	78	15	58	20	9	18	52	1.71
62690--63739	527	2.0	527	99	0	2055	29	16	18	35	1.93
64464--64511	18	2.7	18	93	0	87	27	45	12	14	1.81
65100--65151	19	2.7	19	81	3	59	13	25	23	38	1.91
65515--65605	41	2.2	42	82	2	112	23	41	13	21	1.88
65543--65635	41	2.2	42	80	1	107	23	38	18	19	1.93
67184--67251	19	3.8	19	79	14	83	47	16	20	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67259--67346	20	4.4	20	75	5	97	18	21	21	38	1.93
67560--67608	20	2.5	20	73	6	55	22	16	24	36	1.94
67635--67683	20	2.4	21	86	3	64	20	22	16	40	1.91
68449--68502	24	2.2	24	90	0	81	22	16	20	40	1.91
68677--68701	12	2.1	12	100	0	50	72	0	28	0	0.86
71110--71146	14	2.6	14	91	0	65	45	24	0	29	1.53
72532--72611	42	1.9	42	86	0	115	23	17	37	21	1.94
72869--72901	17	1.9	17	88	11	50	45	15	15	24	1.84
72832--73015	90	2.0	90	91	5	298	47	19	11	21	1.81
73185--73312	63	2.0	63	96	0	238	22	35	19	21	1.96
74765--74825	20	3.1	19	79	9	68	44	18	24	13	1.85
74790--74886	33	2.9	33	92	1	149	42	22	22	12	1.87
75451--75562	20	5.6	20	84	4	82	21	20	20	37	1.94
75443--75700	41	6.3	41	72	11	154	28	18	19	33	1.95
75471--75624	20	7.5	21	78	5	91	27	19	20	33	1.96
75443--75603	61	2.7	60	75	10	175	27	19	19	33	1.96
75675--75727	21	2.5	22	75	6	65	37	18	22	20	1.94

Tables:   1

The End!