Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000436.1 Hibiscus syriacus cultivar Beakdansim tig00000799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35581

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
549--590
21
2.0
22
81
13
52
42
4
30
21
1.73
871--918
24
2.1
23
82
17
57
39
14
8
37
1.76
2541--2565
13
1.9
13
100
0
50
84
0
8
8
0.79
8261--8363
44
2.5
42
84
9
140
46
0
6
45
1.36
8416--8452
10
3.6
10
88
3
56
21
0
0
78
0.75
8419--8451
13
2.5
13
90
9
50
21
0
0
78
0.75
9688--9728
22
1.9
21
95
5
73
17
2
0
80
0.82
10530--10564
16
2.2
16
89
0
52
51
0
2
45
1.16
11151--11193
6
7.2
6
100
0
86
32
32
0
34
1.58
13422--13463
18
2.3
18
84
8
50
69
9
4
16
1.33
14467--14500
2
17.0
2
100
0
68
50
0
0
50
1.00
14657--14694
13
3.0
13
96
3
69
28
15
39
15
1.89
14748--14827
29
2.8
29
92
3
126
15
31
32
21
1.94
14900--14955
27
2.1
27
100
0
112
28
25
21
25
1.99
15117--15167
19
2.9
17
76
20
52
64
0
33
1
1.05
15118--15168
20
2.6
19
85
11
68
66
0
31
1
1.03
15118--15176
15
4.1
15
78
10
52
66
0
32
1
1.02
15300--15388
41
2.2
41
78
8
92
42
1
10
46
1.45
15325--15433
41
2.6
39
80
15
114
39
0
11
49
1.38
15615--15661
16
3.0
16
84
9
53
29
0
10
59
1.31
15636--15666
15
2.1
14
94
5
53
38
0
6
54
1.26
16842--16891
21
2.3
21
76
10
57
38
2
2
58
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17800--17832
17
1.9
17
93
0
57
45
12
6
36
1.66
17817--17885
22
3.0
22
73
19
77
47
7
4
40
1.51
17817--17915
47
2.1
46
81
10
112
48
8
4
39
1.52
18041--18080
14
2.9
14
88
3
55
47
5
2
45
1.38
18026--18141
35
3.1
36
76
10
110
48
6
2
43
1.41
18039--18878
12
63.1
13
70
19
373
44
10
2
43
1.51
18039--18878
26
34.2
26
74
14
608
44
10
2
43
1.51
18055--18936
124
7.2
124
96
2
1606
44
10
2
43
1.51
18055--18936
368
2.4
369
95
2
1605
44
10
2
43
1.51
18633--18666
8
4.2
8
85
14
52
50
8
0
41
1.34
21940--21998
26
2.3
24
78
16
64
40
3
8
47
1.51
22042--22085
21
2.2
20
84
8
54
40
6
6
45
1.57
22259--22314
16
3.2
16
73
24
51
51
12
0
35
1.40
22279--22308
15
1.9
16
93
6
53
43
13
0
43
1.43
22720--22814
45
2.1
45
83
11
124
47
8
1
43
1.40
22785--22851
26
2.4
29
80
14
88
53
10
0
35
1.35
22821--22869
21
2.3
21
85
3
71
53
16
0
30
1.43
23397--23560
81
2.0
81
100
0
328
19
37
17
26
1.93
23553--23612
29
2.1
29
93
0
102
18
35
31
15
1.91
24045--24085
8
5.2
8
97
2
75
36
0
0
63
0.95
24243--24294
22
2.4
22
80
6
52
40
0
21
38
1.53
24436--24473
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!