genome.fa.s4361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004361.1 Hibiscus syriacus cultivar Beakdansim tig00009554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86984

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2858--2896	16	2.5	15	83	4	51	64	5	2	28	1.28
4373--4403	12	2.6	12	100	0	62	67	0	0	32	0.91
4606--4896	133	2.2	132	91	1	467	25	18	30	25	1.98
4829--5001	93	1.9	93	88	0	265	24	19	30	26	1.98
4935--5032	39	2.4	39	83	5	115	22	19	32	25	1.97
5414--5480	35	1.9	35	87	3	100	38	5	14	40	1.71
5699--5771	30	2.4	29	84	2	83	39	10	21	27	1.87
6629--6731	35	2.9	36	87	10	156	37	12	14	34	1.84
7056--8186	4	286.0	4	95	2	2004	24	1	25	48	1.59
9015--9053	10	3.7	10	83	10	51	5	7	7	79	1.05
13062--13100	16	2.5	15	83	4	51	64	5	2	28	1.28
14599--14635	3	12.7	3	83	16	51	64	0	0	35	0.94
14607--14641	17	2.1	17	100	0	70	65	0	0	34	0.93
15366--15441	36	2.1	35	88	7	109	34	7	23	34	1.84
21833--21891	18	3.3	18	79	11	68	45	5	1	47	1.34
21839--21897	18	3.2	18	80	9	57	47	5	1	45	1.34
21907--21952	22	2.1	21	84	15	58	52	8	6	32	1.58
22191--22218	2	14.0	2	100	0	56	50	0	0	50	1.00
22635--22677	14	3.1	14	82	0	59	41	0	2	55	1.12
22758--22809	26	2.0	27	92	3	88	46	0	26	26	1.53
23015--23171	2	80.0	2	68	17	80	45	2	5	46	1.38
23019--23068	15	3.4	15	86	2	66	48	4	4	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23524--23548	13	1.9	13	100	0	50	16	8	32	44	1.76
23840--23921	14	5.5	15	86	7	105	50	4	1	43	1.31
23840--23921	2	40.5	2	80	11	87	50	4	1	43	1.31
23994--24059	7	9.4	7	76	0	60	50	30	0	19	1.48
23992--24054	21	3.0	21	76	0	72	50	28	0	20	1.48
23993--24059	28	2.4	28	84	0	80	50	29	0	19	1.48
25051--25091	16	2.6	15	88	7	55	46	7	17	29	1.74
25463--25566	45	2.3	45	91	0	163	28	24	12	34	1.92
26075--26156	20	4.1	20	80	9	103	29	26	18	25	1.98
26324--26381	22	2.6	22	91	0	89	22	44	15	17	1.86
26813--26885	20	3.7	19	75	15	58	16	15	23	45	1.85
26852--26892	20	2.0	20	95	0	73	9	12	19	58	1.61
26859--26899	20	2.0	20	90	0	64	12	9	21	56	1.65
28808--28851	20	2.2	20	87	0	61	36	29	18	15	1.92
28868--28909	19	2.2	19	95	0	75	54	11	16	16	1.70
28905--28942	20	1.9	20	94	0	67	47	18	21	13	1.82
28947--28983	19	1.9	19	94	0	65	8	10	27	54	1.63
28948--29027	33	2.4	33	82	0	88	11	15	22	51	1.74
29020--29084	20	3.2	20	91	0	103	15	20	26	38	1.92
29074--29117	20	2.2	20	91	0	70	15	13	20	50	1.78
29618--29689	21	3.4	21	76	0	72	20	34	20	23	1.96
29587--29709	42	2.9	41	75	4	120	21	36	17	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30610--30788	90	2.0	91	92	1	297	37	11	6	44	1.66
37382--37557	90	2.0	90	91	2	291	36	11	6	44	1.68
39373--39409	14	2.6	14	91	0	65	32	0	18	48	1.49
39529--39601	20	3.7	20	81	3	76	43	24	16	15	1.86
39544--39594	20	2.5	20	90	0	84	47	21	17	13	1.82
39645--39795	20	7.8	20	80	8	170	26	19	19	33	1.96
39607--39795	94	2.0	94	86	4	265	24	19	20	35	1.95
39766--40188	140	3.0	140	96	0	774	43	14	13	28	1.83
40246--40280	18	1.9	18	94	0	61	17	2	25	54	1.57
42536--42587	24	2.2	24	82	0	59	36	21	19	23	1.95
43402--43504	21	5.0	21	86	8	124	23	16	27	33	1.96
43408--43525	20	5.8	19	79	7	83	22	16	24	35	1.95
43392--43581	41	4.6	41	74	8	120	26	17	24	31	1.97
43375--43581	82	2.5	82	76	6	195	27	16	23	31	1.96
43512--43565	21	2.6	21	84	0	72	31	18	20	29	1.96
43829--44001	94	1.8	94	84	7	235	24	24	14	36	1.93
44011--44056	17	2.8	17	87	6	60	26	26	15	32	1.95
44596--44621	3	8.7	3	100	0	52	65	0	34	0	0.93
46961--47010	19	2.4	21	80	12	59	68	0	10	22	1.19
51130--51164	5	6.8	5	87	6	52	0	17	0	82	0.66
51127--51165	11	3.6	11	86	13	55	0	17	0	82	0.68
58010--58070	18	3.5	18	78	10	56	60	1	27	9	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60393--60422	16	1.9	15	93	6	51	23	0	10	66	1.21
61251--61297	21	2.2	21	96	0	85	14	14	34	36	1.88
79134--79175	19	2.2	20	83	12	52	54	4	16	23	1.61
79192--79233	21	1.9	23	85	9	61	54	2	9	33	1.46
84620--84659	21	1.9	21	94	0	71	35	25	15	25	1.94
84578--84685	38	2.9	37	72	10	103	40	25	10	24	1.86

Tables:   1

The End!