genome.fa.s4363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004363.1 Hibiscus syriacus cultivar Beakdansim tig00009557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194349

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4404--4428	11	2.3	11	100	0	50	52	12	8	28	1.66
7661--7704	2	22.0	2	100	0	88	50	0	0	50	1.00
8222--8289	23	3.0	23	86	0	91	17	25	25	32	1.97
11441--11490	25	2.0	25	88	0	73	70	0	4	26	1.05
16291--16360	14	4.9	14	73	13	61	24	0	5	70	1.09
16291--16356	22	3.0	22	73	6	62	24	0	6	69	1.10
16498--16543	21	2.2	21	88	0	65	41	28	15	15	1.87
18625--18667	21	2.0	21	82	8	52	46	2	37	13	1.57
22583--22613	15	2.1	15	100	0	62	32	19	29	19	1.96
22587--22620	15	2.3	15	89	0	50	29	29	20	20	1.98
23139--23215	38	2.0	39	94	2	138	29	24	15	29	1.96
26476--26502	6	4.5	6	100	0	54	0	14	51	33	1.43
26633--27075	147	3.0	147	97	0	823	33	13	17	36	1.88
32509--32577	5	13.8	5	89	0	75	8	40	36	14	1.77
32575--32623	6	8.2	6	90	0	80	2	14	48	34	1.55
35160--35300	32	4.5	32	74	2	117	32	34	13	19	1.90
38850--38877	5	5.6	5	100	0	56	21	42	17	17	1.89
39539--39614	31	2.5	29	79	12	80	39	3	10	46	1.57
39630--39689	29	2.1	28	84	3	75	40	5	1	53	1.33
40013--40090	31	2.5	31	95	0	138	35	14	25	24	1.93
41977--42012	16	2.2	16	100	0	72	16	22	19	41	1.90
43292--43343	26	2.0	26	88	0	77	30	7	9	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44114--44182	25	2.6	27	76	21	74	43	5	0	50	1.26
44122--44185	27	2.6	25	85	9	78	43	4	0	51	1.22
49204--49241	19	2.0	19	100	0	76	31	26	0	42	1.56
52514--52596	24	3.5	24	86	0	112	24	15	19	40	1.90
52505--52596	48	1.9	48	86	0	130	23	15	18	42	1.88
52521--52618	24	4.1	24	85	1	81	23	11	19	45	1.82
56848--56930	24	3.5	23	85	3	103	28	19	16	34	1.94
56848--56940	24	3.9	24	84	0	78	30	18	16	35	1.92
58708--58931	111	2.0	111	94	1	396	28	11	9	50	1.71
65741--65797	22	2.6	22	88	0	78	31	22	12	33	1.91
65741--65797	11	5.2	11	76	0	60	31	22	12	33	1.91
65841--65878	6	6.0	6	90	9	58	34	15	0	50	1.45
65839--65879	12	3.2	13	89	10	66	34	14	0	51	1.43
66647--66717	24	3.0	24	72	10	65	30	22	23	22	1.99
67094--67126	16	2.1	16	100	0	66	57	24	12	6	1.57
67195--67243	16	3.1	16	90	0	80	61	22	8	8	1.51
67198--67247	26	1.9	26	84	8	66	64	20	6	10	1.45
68268--68342	24	3.1	24	84	0	87	52	21	13	13	1.74
68288--68343	14	4.3	14	76	17	66	48	25	16	10	1.78
69118--69163	19	2.4	19	92	0	74	23	19	6	50	1.71
77003--77045	12	3.6	12	77	0	50	20	18	6	53	1.67
89261--89373	37	3.1	37	96	1	201	46	18	17	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89544--89574	16	1.9	16	100	0	62	41	0	0	58	0.98
90124--90180	20	2.8	20	91	5	87	57	22	19	0	1.40
90168--90215	22	2.2	21	88	3	69	56	27	14	2	1.50
102328--102440	37	3.1	37	94	1	201	46	18	17	16	1.84
103192--103269	20	3.8	20	84	6	86	61	17	16	3	1.49
113288--113354	33	2.0	33	85	5	91	37	14	16	31	1.89
114027--114103	24	3.0	24	78	14	82	9	15	27	48	1.75
114037--114103	14	5.1	14	85	14	106	7	14	26	50	1.70
114027--114103	38	2.0	38	87	5	111	9	15	27	48	1.75
114044--114126	38	2.2	37	82	8	96	12	12	20	55	1.68
114058--114113	24	2.3	24	96	0	103	10	12	21	55	1.67
115211--115277	16	4.3	16	88	3	93	10	10	20	58	1.61
115205--115269	32	2.0	32	90	0	103	7	10	24	56	1.59
115339--115371	16	2.1	16	100	0	66	6	12	24	57	1.57
116448--116541	20	4.6	21	79	11	90	39	23	17	20	1.92
116632--116676	20	2.2	20	84	0	54	44	20	20	15	1.87
116857--116952	40	2.4	40	92	0	165	22	17	18	40	1.91
116861--116949	20	4.4	20	78	2	99	22	17	20	39	1.92
116969--117157	76	2.5	76	96	0	351	25	19	15	39	1.91
117091--117135	20	2.2	20	88	0	63	13	22	20	44	1.85
117164--117253	40	2.2	40	92	0	144	21	16	20	42	1.89
117168--117256	20	4.4	20	77	2	90	21	16	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117229--117281	20	2.6	21	88	5	74	16	16	24	41	1.89
117342--117438	20	4.8	20	77	13	101	17	16	26	39	1.91
117574--117643	32	2.2	32	100	0	140	42	5	14	37	1.69
119006--119049	3	15.0	3	92	4	54	40	0	0	59	0.98
119063--119100	20	1.9	20	88	0	58	28	18	26	26	1.98
121291--121410	21	5.8	21	74	10	79	38	20	20	20	1.94
121356--121408	20	2.7	20	88	5	72	45	24	16	13	1.83
121417--121509	21	4.5	21	80	9	111	35	26	19	18	1.95
121417--121507	41	2.2	41	88	3	139	36	26	18	18	1.94
121537--121632	33	2.8	33	87	3	129	14	22	19	42	1.88
121958--122051	20	4.7	21	84	5	124	34	24	22	19	1.97
122034--122101	33	2.1	33	88	0	100	42	17	25	14	1.87
122828--122881	26	2.1	26	100	0	108	31	12	14	40	1.84
123639--123749	42	2.6	42	73	9	109	25	17	34	23	1.96
124231--124317	20	4.3	20	95	0	129	35	21	19	22	1.96
124381--124428	19	2.5	19	86	0	60	10	16	25	47	1.78
124529--124908	94	4.1	94	92	2	613	48	18	11	21	1.80
126604--126659	20	2.8	20	81	10	78	41	21	23	14	1.89
126595--126750	19	8.6	19	77	16	152	45	20	22	11	1.83
126603--126754	52	2.9	52	91	2	232	45	21	21	11	1.83
126765--126815	20	2.5	20	90	0	75	13	13	21	50	1.76
126878--126908	11	2.8	11	100	0	62	74	16	9	0	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127386--127598	20	10.5	20	80	7	232	18	18	25	37	1.94
127387--127659	81	3.4	82	85	6	335	18	18	25	37	1.93
127387--127598	41	5.2	41	92	1	338	18	18	25	37	1.94
127607--127659	20	2.7	20	91	5	81	13	18	24	43	1.86
127386--127659	40	6.8	39	79	11	216	18	18	25	37	1.93
127653--127704	21	2.5	22	75	9	54	25	19	19	36	1.95
127712--127762	20	2.5	20	78	6	59	15	17	33	33	1.92
128371--128452	30	2.8	29	81	3	94	37	2	3	56	1.30
128375--128511	29	4.7	28	78	11	98	40	5	3	50	1.44
131480--131573	23	4.0	24	76	14	97	19	24	24	31	1.98
132219--132245	14	1.9	14	100	0	54	22	18	22	37	1.95
135388--135429	18	2.3	18	91	0	66	33	2	28	35	1.70
138124--138201	23	3.3	23	71	16	79	16	23	25	34	1.95
138130--138202	24	3.1	24	72	20	64	15	23	24	36	1.93
138846--138873	14	2.0	14	100	0	56	21	21	21	35	1.96
141118--141166	21	2.3	21	86	13	66	22	16	22	38	1.92
143813--143970	63	2.5	63	82	5	178	25	18	21	34	1.96
147736--147856	64	1.9	63	88	5	181	24	17	22	35	1.95
151285--151319	17	2.1	17	88	0	52	40	5	8	45	1.58
154751--155002	138	1.8	139	86	5	368	38	23	9	29	1.86
155475--155509	3	11.7	3	100	0	70	31	0	0	68	0.90
160154--160203	20	2.5	20	86	0	64	32	12	20	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163024--163060	16	2.3	16	100	0	74	27	21	5	45	1.73
164675--164735	30	2.0	30	96	0	113	24	21	27	26	1.99
170519--170544	2	13.0	2	100	0	52	50	0	0	50	1.00
171008--171065	23	2.5	23	82	0	71	53	12	20	13	1.72
179993--180025	14	2.4	14	90	10	50	63	12	3	21	1.41
180286--180319	18	1.9	17	88	5	50	64	5	0	29	1.17
188351--188384	18	1.9	17	88	5	50	64	5	0	29	1.17
192112--192149	19	2.0	20	84	5	51	23	28	23	23	1.99

Tables:   1

The End!