Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004364.1 Hibiscus syriacus cultivar Beakdansim tig00009561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90523

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5703--5741
21
1.9
21
89
5
62
41
0
2
56
1.13
15721--15777
24
2.4
24
90
0
87
21
5
21
52
1.66
23157--23197
2
20.0
2
95
5
73
48
0
2
48
1.14
33325--33388
23
2.8
23
85
0
83
28
26
25
20
1.99
42779--42846
31
2.2
31
81
5
75
30
22
14
32
1.94
49178--49210
14
2.4
14
95
5
59
0
9
0
90
0.44
55374--55433
20
3.1
19
73
9
59
68
3
3
25
1.20
57116--57158
20
2.2
20
91
0
68
34
20
11
32
1.89
58758--58799
19
2.2
19
95
0
75
14
19
16
50
1.79
62592--62630
21
1.9
21
84
5
53
25
17
25
30
1.97
62742--62781
21
1.9
21
94
0
71
25
15
25
35
1.94
68245--68286
21
1.9
23
85
9
61
33
9
2
54
1.46
68303--68345
20
2.2
20
87
8
61
25
16
4
53
1.62
71851--72054
102
2.0
101
91
0
327
29
26
17
26
1.97
72860--72889
9
3.3
9
95
0
51
73
6
10
10
1.25
86138--86184
21
2.2
21
96
0
85
36
34
14
14
1.88
87007--87037
16
1.9
16
93
0
53
67
9
0
22
1.19

Tables:   1

The End!