Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004366.1 Hibiscus syriacus cultivar Beakdansim tig00009566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64547

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8002--8059
30
1.9
31
85
3
82
50
20
1
27
1.58
10652--10690
20
1.9
21
89
5
62
28
25
17
28
1.98
11224--11273
21
2.4
21
96
0
91
56
20
4
20
1.58
23217--23261
22
2.0
22
83
12
56
71
8
6
13
1.31
23645--23670
2
13.0
2
100
0
52
0
50
0
50
1.00
29052--29277
58
3.9
58
84
4
285
39
18
11
30
1.86
31172--31206
2
17.5
2
100
0
70
48
0
0
51
1.00
31276--31518
38
6.5
37
75
13
153
43
4
8
44
1.53
31290--31542
34
6.9
37
76
12
168
43
3
8
44
1.53
31415--31439
12
2.1
12
100
0
50
40
8
8
44
1.63
31345--31557
36
5.8
36
73
14
152
42
5
9
42
1.60
31322--31569
72
3.4
71
80
9
221
43
4
8
43
1.57
31628--31661
3
11.3
3
93
0
59
29
0
0
70
0.87
33902--33942
1
41.0
1
85
0
55
0
2
4
92
0.44
34572--34616
19
2.4
19
92
3
74
11
13
8
66
1.44
37969--38740
165
4.7
164
84
4
964
30
24
20
24
1.99
38017--38740
250
2.9
245
89
1
1097
30
24
20
24
1.99
39340--39615
34
7.6
37
75
14
161
42
4
8
44
1.55
39369--39497
39
3.4
39
79
14
119
48
3
5
41
1.44
39465--39489
12
2.1
12
100
0
50
40
8
8
44
1.63
39454--39602
69
2.1
70
80
7
160
38
6
11
44
1.65
39672--39709
3
12.3
3
94
5
67
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50005--50087
29
2.8
29
88
1
121
40
10
15
32
1.82
54660--54740
29
2.8
29
92
1
126
41
9
14
33
1.79
56389--56427
17
2.3
17
100
0
78
12
0
35
51
1.40
56389--56434
17
2.7
17
93
0
65
15
0
32
52
1.43
63368--63441
23
3.3
22
75
7
69
32
22
22
21
1.98
63447--63655
100
2.1
102
90
3
325
36
23
13
25
1.92

Tables:   1

The End!