Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004367.1 Hibiscus syriacus cultivar Beakdansim tig00009567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97286

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
692--725
2
17.0
2
93
0
59
50
0
2
47
1.16
1562--1625
20
3.2
20
66
16
60
21
18
23
35
1.95
2431--2620
21
9.3
19
78
13
182
33
24
20
21
1.97
2459--2628
63
2.8
63
93
3
285
34
25
20
20
1.96
2624--2676
21
2.5
21
90
0
79
18
20
30
30
1.97
13762--13829
2
34.0
2
100
0
136
50
0
0
50
1.00
14269--14320
22
2.3
23
87
6
72
42
1
0
55
1.10
16257--16302
21
2.2
21
96
0
83
19
26
6
47
1.73
18535--18622
29
2.9
30
81
8
99
38
11
7
42
1.70
18552--18622
29
2.4
31
85
4
101
38
12
8
40
1.74
19146--19227
30
2.7
29
79
9
92
41
1
2
54
1.21
19178--19225
19
2.6
18
81
15
53
41
2
2
54
1.24
19147--19229
10
8.1
10
71
18
55
40
1
2
55
1.21
19146--19230
31
2.8
30
78
7
91
42
1
2
54
1.21
19824--19914
31
3.0
28
79
16
87
56
3
1
39
1.23
20500--20530
8
3.9
8
100
0
62
35
12
25
25
1.92
20731--20772
20
2.0
21
90
4
68
57
14
23
4
1.56
20799--20846
15
3.1
15
84
6
60
37
10
16
35
1.83
21260--21336
18
4.1
18
86
6
109
44
16
6
32
1.74
21260--21336
19
4.1
19
86
8
104
44
16
6
32
1.74
21260--21336
37
2.0
38
90
5
120
44
16
6
32
1.74
22475--22525
17
3.0
17
73
15
52
29
13
11
45
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24363--24471
9
11.8
9
71
14
71
72
3
7
16
1.22
24517--24606
14
6.8
13
80
17
66
63
2
1
33
1.14
24531--24611
3
28.0
3
81
16
100
64
1
1
33
1.10
24516--24611
17
5.9
17
83
10
121
63
2
1
33
1.13
24511--24609
26
3.7
26
80
16
96
63
2
1
33
1.12
24531--24611
31
2.6
31
86
7
112
64
1
1
33
1.10
24670--24755
20
4.1
22
73
20
76
75
3
4
16
1.11
27699--27750
6
7.8
6
76
19
50
1
13
1
82
0.84
27698--27752
7
8.0
7
80
15
62
1
14
1
81
0.85
41089--41171
41
2.0
41
97
0
157
34
8
36
20
1.83
49329--49436
14
8.2
14
67
20
72
74
3
7
14
1.18
49574--49686
21
5.2
23
68
25
70
74
3
6
15
1.16
49625--49668
15
2.9
14
83
12
52
79
0
4
15
0.89
52517--53353
414
2.0
413
87
3
1191
38
9
8
44
1.66
60201--60225
12
2.1
12
100
0
50
24
44
24
8
1.80
65665--65737
3
24.3
3
81
10
87
34
4
0
61
1.15
66112--66164
19
2.8
19
97
0
97
20
30
26
22
1.98
66195--66225
16
1.9
16
100
0
62
6
25
32
35
1.82
67142--67184
12
3.3
13
83
9
52
32
6
2
58
1.38
68834--68902
36
1.9
36
87
0
102
42
15
11
30
1.83
69356--69442
43
2.0
44
88
2
131
29
11
24
34
1.90
69517--69557
7
6.0
7
81
13
50
14
14
12
58
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73661--73701
21
1.9
22
90
5
66
75
0
4
19
0.98
74168--74197
12
2.5
12
88
0
51
66
3
23
6
1.30
74350--74513
76
2.2
76
88
3
242
56
10
2
29
1.47
81905--81945
21
1.9
22
90
5
66
75
0
4
19
0.98
82575--82637
19
3.2
19
75
4
54
55
12
0
31
1.37
86110--86264
54
2.9
53
81
3
175
39
16
21
21
1.92
86625--86708
22
3.8
22
81
12
91
35
10
13
40
1.79
87388--87606
76
2.9
76
90
2
327
26
19
20
33
1.96
87540--87903
45
8.1
45
91
1
561
25
21
19
33
1.97
88210--88291
3
27.3
3
80
9
96
37
1
0
60
1.04
88210--88291
23
3.6
23
80
9
105
37
1
0
60
1.04
88213--88290
20
3.8
20
81
11
95
37
1
0
61
1.04
88262--88305
20
2.2
20
83
0
52
45
0
0
54
0.99
91637--91708
17
4.1
18
77
12
62
73
2
1
22
1.04
94222--94321
31
2.9
33
85
11
123
38
17
9
36
1.81

Tables:   1

The End!