genome.fa.s4369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004369.1 Hibiscus syriacus cultivar Beakdansim tig00009571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122455

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420--1471	23	2.3	23	86	0	77	34	28	21	15	1.94
1552--1590	16	2.6	16	88	8	55	41	20	10	28	1.85
1709--1735	8	3.4	8	100	0	54	48	14	11	25	1.77
3347--3377	16	2.0	15	93	6	53	32	12	0	54	1.38
21193--21222	2	15.0	2	100	0	60	50	0	0	50	1.00
23540--23574	17	2.1	16	89	5	52	48	5	0	45	1.26
31356--31393	17	2.3	17	86	13	53	39	2	0	57	1.12
31358--31411	19	3.0	18	76	15	58	40	3	0	55	1.17
34713--34767	21	2.7	20	80	5	56	40	10	1	47	1.49
35401--35461	31	2.0	31	87	6	88	39	4	9	45	1.59
35999--36084	23	4.3	18	72	21	57	54	1	0	44	1.07
35983--36133	62	2.4	63	90	5	236	55	1	0	42	1.11
36003--36088	39	2.3	35	82	9	100	54	1	0	44	1.07
36048--36118	25	2.7	26	77	16	76	57	1	0	40	1.07
36116--36157	22	1.9	22	85	9	59	64	2	0	33	1.07
36169--36209	20	2.0	20	85	0	55	36	17	21	24	1.94
48066--48102	18	2.1	18	100	0	74	62	16	5	16	1.51
50221--50262	21	2.0	22	85	4	59	45	2	16	35	1.61
50906--50972	31	2.2	31	83	0	80	20	20	16	41	1.90
53273--53318	23	2.0	23	86	0	65	34	26	19	19	1.96
53334--53548	103	2.1	103	100	0	430	36	23	13	26	1.93
54681--54836	31	5.0	31	88	1	215	35	21	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55309--55349	18	2.4	18	88	8	59	41	17	4	36	1.71
55702--55746	21	2.1	21	87	0	63	15	24	28	31	1.96
58660--58815	31	5.0	31	91	1	233	35	21	21	21	1.96
59289--59329	18	2.4	18	88	8	59	41	17	4	36	1.71
59681--59725	21	2.1	21	87	0	63	15	24	28	31	1.96
62643--62798	31	5.0	31	91	1	233	35	21	21	21	1.96
63275--63315	18	2.4	18	88	8	59	41	17	4	36	1.71
63668--63712	21	2.1	21	87	0	63	15	24	28	31	1.96
66632--66786	31	5.0	31	91	1	231	36	21	21	21	1.96
67261--67289	14	2.0	15	93	6	51	41	20	6	31	1.79
67653--67697	21	2.1	21	87	0	63	15	24	28	31	1.96
68938--68973	2	18.0	2	100	0	72	50	0	0	50	1.00
74896--75086	84	2.3	84	85	0	256	37	21	17	23	1.94
88173--88243	35	2.0	35	94	0	124	38	19	21	21	1.94
88457--88504	21	2.3	21	96	0	87	31	33	18	16	1.94
88521--88702	21	8.8	21	78	10	187	21	19	25	33	1.97
88513--88702	42	4.6	40	81	6	218	22	19	24	33	1.97
88512--88702	84	2.3	82	90	1	301	21	19	24	34	1.97
88792--88816	6	4.2	6	100	0	50	36	48	16	0	1.46
89472--89523	21	2.5	21	87	3	70	26	32	21	19	1.97
90790--90829	20	2.0	20	90	4	64	27	12	5	55	1.58
91239--92540	198	6.6	198	89	2	1795	30	15	15	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91239--92540	397	3.3	394	88	2	1813	30	15	15	38	1.89
92896--92944	19	2.6	19	93	0	80	57	8	2	32	1.40
93152--93205	22	2.5	21	82	8	63	22	0	7	70	1.12
95555--95681	31	4.1	31	78	9	141	29	18	20	31	1.96
95669--95740	30	2.4	30	90	0	108	25	20	23	30	1.99
96661--97378	182	3.9	183	83	7	844	26	14	15	43	1.85
99888--99931	16	2.9	16	84	15	51	54	29	11	4	1.56
105670--105706	2	18.5	2	100	0	74	51	0	0	48	1.00
112652--112730	39	2.0	40	90	5	124	43	10	15	31	1.80
115902--115961	31	1.9	31	82	0	75	46	1	1	50	1.21
115932--115980	22	2.3	23	79	10	59	44	2	0	53	1.12
118047--118264	103	2.1	103	95	0	391	26	12	23	36	1.91
118271--118347	23	3.3	23	77	1	82	27	20	19	32	1.97

Tables:   1

The End!