genome.fa.s437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000437.1 Hibiscus syriacus cultivar Beakdansim tig00000800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75886

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--428	21	2.8	21	75	21	66	26	33	10	29	1.90
352--428	41	1.9	40	84	7	102	24	35	11	28	1.91
3430--3473	22	2.0	22	83	12	56	11	20	40	27	1.86
5610--5653	13	3.3	14	78	12	56	43	9	13	34	1.76
10006--10045	21	1.9	21	90	10	64	32	10	5	52	1.56
12415--12852	188	2.3	187	81	3	459	28	15	21	34	1.94
12873--13273	188	2.1	188	80	1	446	31	16	19	31	1.95
20017--20052	18	1.9	19	88	5	56	50	0	2	47	1.15
25329--25407	23	3.2	22	74	22	68	39	1	5	54	1.30
25331--25433	52	2.0	52	88	3	154	38	0	8	51	1.40
25272--25542	29	9.6	29	75	11	152	35	1	11	51	1.46
25270--25521	58	4.4	58	75	11	177	35	1	10	51	1.46
27315--27378	32	2.0	32	87	0	92	21	31	23	23	1.99
27869--27907	17	2.3	17	86	0	60	58	0	0	41	0.98
27993--28040	20	2.3	20	86	10	62	56	0	2	41	1.11
29677--29728	3	17.0	3	84	4	68	63	1	0	34	1.06
29881--30041	76	2.1	76	94	2	279	36	21	19	21	1.95
29973--30086	45	2.5	45	92	2	183	33	21	22	21	1.97
30020--30922	76	11.9	76	97	0	1675	35	21	20	21	1.96
29907--30162	121	2.1	121	94	1	451	34	21	21	22	1.97
30854--30967	45	2.5	45	89	2	165	33	20	22	23	1.97
30778--31043	121	2.2	121	95	1	469	34	21	21	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30702--31097	197	2.0	199	96	1	742	34	21	21	21	1.97
30901--31097	76	2.6	77	95	2	355	35	21	21	21	1.96
31776--31853	22	3.5	22	85	3	102	38	14	11	35	1.82
34397--34847	115	3.9	115	95	0	796	30	19	15	34	1.93
41043--41086	22	1.9	24	86	9	65	61	6	4	27	1.41
41070--41110	17	2.4	18	84	11	52	70	0	2	26	0.99
41105--41145	20	2.0	21	85	4	57	65	0	9	24	1.22
41589--41628	18	2.3	17	82	4	53	60	0	0	40	0.97
41627--41847	112	2.0	112	81	5	263	47	9	9	34	1.67
41925--41983	27	2.1	28	84	3	75	62	3	3	30	1.28
43434--43489	3	19.0	3	85	3	78	64	1	0	33	1.04
46705--46809	29	3.6	29	77	10	108	40	17	20	21	1.91
50214--50268	22	2.5	22	82	14	76	14	12	1	70	1.24
56117--56283	85	2.0	85	89	0	253	32	20	20	26	1.97
56893--56936	16	2.7	16	82	3	52	34	6	11	47	1.66
56928--57221	38	7.8	38	88	4	409	44	2	7	45	1.43
57261--57287	2	13.5	2	100	0	54	48	0	0	51	1.00
57877--57919	21	2.0	21	86	8	61	46	11	25	16	1.80
58533--58646	36	3.2	36	94	2	203	21	7	2	69	1.25
63655--63706	21	2.5	21	81	3	61	40	17	21	21	1.91
63644--63748	41	2.6	40	74	6	95	33	20	16	29	1.95
63716--63777	20	3.0	21	78	4	63	22	20	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63775--63888	20	5.7	20	83	4	122	37	19	21	21	1.94
64582--64653	35	2.1	35	84	5	94	22	31	13	31	1.93
65016--65155	8	19.0	7	67	22	51	25	17	29	27	1.97
65261--65320	30	2.0	30	96	0	111	45	20	5	30	1.72
68115--68184	34	2.1	32	86	5	95	21	32	15	30	1.94
68549--68594	8	6.2	8	76	19	55	26	15	36	21	1.93
68549--68611	28	2.2	29	94	2	110	28	15	34	20	1.94
68792--68851	30	2.0	30	96	0	111	45	16	5	33	1.69
71614--71705	19	5.4	19	66	24	78	46	17	19	16	1.84
71614--71759	33	4.4	33	90	0	211	47	17	19	15	1.82
71769--71895	33	3.8	33	94	0	209	12	22	18	45	1.83
72715--72806	42	2.2	42	86	5	134	20	15	41	22	1.90
72741--72802	21	2.9	21	72	11	63	20	12	41	24	1.87
73145--73212	20	3.4	20	89	0	73	35	26	17	20	1.95
73167--73254	20	4.4	20	82	4	106	37	22	23	15	1.93
73227--73285	19	3.4	19	73	22	74	47	20	18	13	1.82
73341--73398	19	3.3	18	72	22	61	12	18	22	46	1.82
73310--73398	33	2.8	33	91	3	146	10	17	22	49	1.77
73325--73383	14	3.9	14	74	20	55	10	16	22	50	1.75
73937--73984	18	2.7	18	90	0	78	16	12	43	27	1.84
75792--75854	20	3.2	20	80	8	85	25	15	28	30	1.96
75792--75848	18	3.1	18	84	5	78	28	14	28	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75766--75886	38	3.1	39	76	8	120	24	14	23	36	1.93

Tables:   1

The End!