genome.fa.s4370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004370.1 Hibiscus syriacus cultivar Beakdansim tig00009572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77955

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2005--2127	42	2.9	42	80	2	122	22	35	17	23	1.95
3481--3516	14	2.6	14	95	0	63	30	0	25	44	1.54
3694--3824	19	7.7	19	67	23	103	15	22	19	42	1.88
3698--3824	33	3.9	32	85	8	184	15	22	18	42	1.89
3691--3823	66	2.0	66	95	0	239	17	22	18	41	1.90
6052--6076	12	2.1	12	100	0	50	0	28	0	72	0.86
6251--6303	23	2.2	24	86	3	72	39	20	16	22	1.92
7359--7416	20	2.9	20	97	0	107	37	24	22	15	1.93
7439--7512	19	4.5	16	83	16	66	13	20	18	47	1.82
7435--7502	19	3.8	19	87	12	101	13	22	17	47	1.82
7619--7655	14	2.6	14	86	0	56	48	21	0	29	1.50
9523--9589	19	3.5	19	83	4	89	37	23	23	14	1.93
9578--9635	14	3.9	14	75	16	62	50	25	15	8	1.73
9562--9640	32	2.4	33	93	2	133	48	24	17	10	1.78
9647--9742	19	5.6	17	70	21	69	12	19	20	46	1.82
9669--9726	14	3.9	14	75	16	62	10	17	22	50	1.76
9652--9742	32	2.8	33	89	3	148	12	18	20	48	1.80
9727--9781	20	2.8	19	83	8	65	16	23	23	36	1.94
10262--10306	18	2.5	18	88	0	72	13	15	44	26	1.83
11626--11668	20	2.2	20	95	0	77	53	18	18	9	1.70
11939--11987	22	2.3	21	80	10	55	22	12	44	20	1.84
11946--11989	22	2.0	22	90	0	70	18	13	47	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12177--12290	20	5.7	20	78	6	104	24	18	25	31	1.97
12280--12372	20	4.5	21	75	4	91	17	24	17	40	1.90
12280--12372	41	2.3	41	96	0	141	17	24	17	40	1.90
16188--16746	57	9.9	57	75	4	382	32	33	16	18	1.93
16214--16725	114	4.5	114	81	3	509	32	33	16	17	1.93
17967--18015	2	24.5	2	100	0	98	48	0	0	51	1.00
22573--22620	23	2.1	23	84	3	62	58	6	6	29	1.47
23918--23958	19	2.2	19	95	4	75	24	14	12	48	1.78
24359--24445	3	28.0	3	77	11	86	60	4	1	33	1.24
24410--24444	13	2.7	13	90	0	52	62	8	0	28	1.24
26186--26254	30	2.3	30	82	7	77	39	10	20	30	1.85
27749--27870	59	2.1	59	90	0	190	27	18	26	27	1.98
31162--31301	53	2.6	54	89	5	214	40	9	16	34	1.80
31365--32074	81	8.8	81	86	1	908	35	11	21	31	1.89
32171--32213	2	21.5	2	100	0	86	51	0	0	48	1.00
32855--33477	81	7.8	81	88	2	857	35	11	22	30	1.90
32855--33393	236	2.3	236	88	2	799	35	11	22	30	1.89
32855--33460	317	1.9	317	89	2	939	35	11	22	30	1.90
37940--38621	163	4.2	160	81	6	678	26	17	22	33	1.96
37938--38621	82	8.4	82	83	2	700	26	17	22	33	1.96
38612--39138	229	2.3	227	85	1	705	31	19	17	31	1.95
41976--42035	20	3.0	20	74	11	61	55	8	15	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63894--64017	41	3.0	41	71	4	117	26	16	18	38	1.91
66166--66207	18	2.4	17	81	18	50	26	9	14	50	1.73
66563--66590	14	2.0	14	100	0	56	35	7	14	42	1.73
67141--67420	137	2.0	137	90	2	409	46	11	15	26	1.79
68099--68135	2	18.5	2	100	0	74	51	0	0	48	1.00
74850--74894	14	3.1	14	87	12	72	46	15	22	15	1.83
77369--77581	102	2.1	104	91	4	351	49	26	7	16	1.73

Tables:   1

The End!