genome.fa.s4371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004371.1 Hibiscus syriacus cultivar Beakdansim tig00009575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49045

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128--1154	13	2.1	13	100	0	54	0	25	0	74	0.83
1326--1379	24	2.3	23	87	6	81	38	20	16	24	1.92
2239--2288	20	2.5	20	80	0	73	38	22	18	22	1.94
2502--2575	20	3.7	20	69	7	60	40	20	20	18	1.92
2500--2586	40	2.2	40	89	2	140	42	19	19	18	1.89
2601--2649	19	2.6	19	100	0	98	14	20	16	48	1.80
2786--2822	14	2.6	14	86	0	56	48	21	0	29	1.50
4680--4747	20	3.5	19	78	6	73	39	23	22	14	1.91
4736--4793	14	3.9	14	79	16	71	48	24	17	10	1.78
4720--4798	32	2.4	33	95	2	142	46	22	18	11	1.81
4826--4883	14	3.9	14	79	16	71	10	17	24	48	1.78
4810--4899	32	2.8	32	96	1	162	12	18	22	46	1.82
4884--4938	20	2.8	19	83	8	65	16	23	23	36	1.94
5420--5464	18	2.5	18	88	0	72	13	15	44	26	1.83
6783--6836	20	2.8	20	80	2	65	48	22	16	12	1.80
7070--7113	22	2.0	22	100	0	88	18	13	45	22	1.84
7281--7415	20	6.7	20	80	9	114	23	18	24	33	1.97
7281--7418	61	2.3	61	84	2	188	23	18	23	34	1.96
7322--7456	61	2.2	60	81	5	155	22	20	21	35	1.96
7404--7455	20	2.5	21	87	3	70	19	25	17	38	1.93
13541--13627	27	3.3	27	85	6	115	28	16	11	43	1.82
13616--13699	23	3.7	23	91	0	123	27	21	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14012--14121	56	2.0	56	96	1	204	19	10	19	50	1.76
15811--15867	28	2.0	28	83	6	71	31	5	8	54	1.53
17927--17970	18	2.4	19	80	7	54	52	4	4	38	1.42
21786--21847	23	2.8	22	85	2	79	22	25	29	22	1.99
21765--21847	23	3.8	22	75	13	73	21	24	28	25	1.99
31226--31265	21	1.9	21	85	10	55	35	10	2	52	1.48
35167--35193	2	13.5	2	100	0	54	48	0	0	51	1.00
36173--36222	22	2.2	22	85	3	64	8	16	18	58	1.62
36470--36503	14	2.2	16	90	10	54	8	5	14	70	1.31

Tables:   1

The End!