genome.fa.s4372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004372.1 Hibiscus syriacus cultivar Beakdansim tig00009577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111654

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4974--5036	32	2.0	32	81	6	74	46	4	12	36	1.63
15381--15419	21	1.9	20	84	5	51	38	20	10	30	1.86
15408--15455	22	2.2	21	82	14	53	45	31	2	20	1.63
20991--21112	40	3.0	40	96	0	226	23	15	26	34	1.95
21217--21341	47	2.8	44	85	9	164	39	7	22	31	1.81
24168--24213	15	3.3	15	76	14	53	76	0	15	8	1.02
24150--24201	15	3.2	16	81	8	52	76	1	15	5	1.05
24141--24178	17	2.2	17	95	0	67	76	2	18	2	1.02
24140--24244	6	17.3	6	72	12	72	74	1	19	4	1.09
24158--24219	32	1.9	32	83	9	81	74	0	17	8	1.06
27818--27899	40	2.0	40	93	4	139	24	14	25	35	1.94
28004--28129	47	2.8	45	85	8	166	39	7	22	30	1.81
28565--28625	22	2.7	23	92	2	81	21	32	24	21	1.98
28573--28625	22	2.4	22	100	0	106	20	35	20	22	1.96
30079--30132	22	2.4	22	82	14	58	42	29	3	24	1.72
30093--30140	22	2.2	21	82	14	53	45	31	2	20	1.63
33681--33717	19	1.9	19	94	0	65	32	29	16	21	1.95
34043--34093	22	2.3	22	93	0	93	23	45	11	19	1.83
34513--34550	20	1.9	20	94	0	67	21	23	18	36	1.95
34538--34588	20	2.5	20	93	0	84	11	13	23	50	1.74
34552--34595	20	2.2	20	91	0	70	11	13	20	54	1.69
36623--36710	20	4.4	20	80	0	104	20	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36623--36710	40	2.2	40	87	0	122	20	18	23	37	1.94
37171--37282	42	2.7	42	81	0	116	21	36	18	23	1.95
37160--37267	21	5.1	21	73	4	92	19	36	19	25	1.95
38588--38624	14	2.6	14	100	0	74	29	0	21	48	1.50
38766--39182	20	21.6	20	76	8	272	29	20	20	29	1.98
38776--39178	133	3.0	133	86	2	531	29	20	21	29	1.98
38729--39008	153	1.8	153	87	1	418	30	21	20	28	1.98
38929--39135	113	1.8	114	81	3	256	30	19	20	29	1.97
39042--39182	59	2.4	60	87	3	196	28	17	21	32	1.96
39153--39435	140	2.0	140	95	0	503	44	14	12	28	1.82
41462--41498	14	2.5	15	91	4	58	5	18	21	54	1.64
42588--42628	20	2.0	20	90	0	64	29	17	26	26	1.97
42654--42690	19	1.9	19	88	0	56	21	13	29	35	1.92
54788--54880	21	4.4	21	94	0	159	45	24	22	7	1.78
55389--55511	39	3.2	39	92	1	203	29	15	27	27	1.96
59129--59160	2	16.0	2	100	0	64	50	0	0	50	1.00
61943--62033	29	3.3	29	62	22	77	10	28	12	48	1.74
61940--62047	54	2.0	54	100	0	216	11	29	12	46	1.77
63219--63332	21	5.4	21	70	15	101	36	23	18	21	1.95
63211--63388	42	4.3	42	93	1	297	34	24	17	23	1.96
63211--63351	21	6.8	20	68	16	90	34	25	17	21	1.96
63452--63497	19	2.3	20	85	7	67	23	15	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73777--73821	20	2.2	20	100	0	90	44	6	20	28	1.76
73940--74011	15	4.9	15	82	3	101	41	6	19	31	1.78
73940--74011	30	2.4	30	97	2	137	41	6	19	31	1.78
73994--74063	20	3.5	20	90	0	113	41	8	12	37	1.74
74231--74379	29	5.0	30	70	16	114	51	1	1	46	1.18
74262--74302	21	2.0	20	85	9	55	56	0	0	43	0.99
74231--74382	60	2.5	60	77	13	161	50	1	1	46	1.17
74262--74399	32	4.4	31	72	17	97	52	0	0	45	1.11
74353--74398	10	4.5	10	78	21	51	58	0	0	41	0.98
74354--74410	22	2.6	22	84	10	73	54	0	0	45	0.99
74361--74410	21	2.3	21	86	10	66	54	0	0	46	1.00
74603--74715	42	2.7	42	94	0	199	46	19	18	15	1.85
75736--75772	20	1.9	19	89	10	58	18	18	10	51	1.75
81202--81228	2	13.5	2	100	0	54	51	0	0	48	1.00
81281--81310	15	2.0	15	100	0	60	13	26	6	53	1.64
84944--84975	2	16.0	2	100	0	64	50	0	0	50	1.00
85076--85100	2	12.5	2	100	0	50	48	0	0	52	1.00
88040--88090	3	16.7	3	78	11	50	60	0	1	37	1.08
88056--88094	21	1.9	20	89	5	60	66	0	0	33	0.92
88057--88093	13	3.1	12	92	7	58	64	0	0	35	0.94
89451--89480	2	15.0	2	92	0	51	50	3	0	46	1.18
89753--89881	30	4.3	30	96	1	224	29	25	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89753--89898	60	2.5	60	88	1	213	30	25	23	20	1.98
91081--91125	21	2.1	21	87	0	63	15	24	28	31	1.96
92912--93193	114	2.6	111	84	5	369	22	22	26	28	1.99
92988--93225	114	2.1	114	85	3	318	22	22	26	28	1.99
92991--93265	114	2.4	114	82	3	304	21	21	26	30	1.98
93471--93575	45	2.3	45	81	3	122	25	20	32	20	1.98
93497--93585	45	2.0	45	84	0	115	23	22	33	20	1.97
94634--94660	13	2.1	13	100	0	54	33	29	7	29	1.85
95891--95934	22	2.0	22	95	0	79	38	9	34	18	1.82
96051--96105	29	1.9	28	88	3	83	41	7	14	36	1.74
96606--96648	22	1.9	23	85	4	61	46	4	11	37	1.61
101679--101735	17	3.2	18	78	12	55	29	3	0	66	1.08
101704--101742	17	2.3	17	86	8	53	20	2	0	76	0.90
104175--104201	2	13.5	2	100	0	54	48	0	0	51	1.00
106098--106166	36	1.9	36	91	2	113	17	8	18	55	1.67
108377--108493	31	3.8	30	75	11	112	50	3	2	43	1.32
108377--108485	32	3.5	31	81	5	94	51	3	2	42	1.34
108661--108699	13	2.9	13	88	3	51	10	15	17	56	1.66
108661--108709	14	3.6	14	86	5	55	14	14	14	57	1.66
108894--108960	10	5.9	10	73	24	53	19	17	8	53	1.70
108903--108949	14	3.6	14	78	21	66	21	21	8	48	1.76
108894--108959	24	2.8	24	97	0	123	19	18	9	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109400--109427	3	9.3	3	100	0	56	64	0	35	0	0.94

Tables:   1

The End!