genome.fa.s4373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004373.1 Hibiscus syriacus cultivar Beakdansim tig00009581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62459

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2077--2110	18	1.9	18	88	5	52	26	32	26	14	1.95
5814--5845	6	5.3	6	92	0	55	18	46	0	34	1.49
11879--11945	28	2.3	29	87	10	93	25	10	0	64	1.25
11879--11945	29	2.3	28	87	10	91	25	10	0	64	1.25
13274--13330	29	1.9	30	86	10	82	42	8	17	31	1.80
14388--14467	35	2.3	35	97	0	151	20	6	32	41	1.77
15404--15558	41	3.8	41	81	3	179	30	18	13	36	1.90
15602--15645	23	2.0	22	86	4	61	18	22	0	59	1.38
19674--19732	21	2.8	21	94	0	100	20	6	22	50	1.71
19975--20019	14	3.5	13	77	22	51	15	13	11	60	1.60
19966--20021	24	2.2	26	87	9	89	17	12	14	55	1.69
19992--20020	14	2.1	14	100	0	58	13	13	17	55	1.70
20276--20338	23	2.7	23	80	11	74	7	9	22	60	1.54
20284--20349	33	2.0	34	87	3	98	6	12	22	59	1.55
20304--20334	10	3.1	10	95	0	53	3	9	25	61	1.42
20417--20449	16	2.1	16	100	0	66	6	12	24	57	1.57
22395--22432	20	1.9	20	88	0	58	31	15	15	36	1.90
22472--22560	19	4.6	20	85	1	110	32	20	13	33	1.91
22472--22560	39	2.3	39	84	7	110	32	20	13	33	1.91
24543--24619	24	3.6	22	75	20	67	29	19	25	24	1.98
26145--26190	23	2.0	23	91	0	74	21	21	26	30	1.99
31697--31742	23	2.0	23	91	0	74	21	21	26	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33309--33352	17	2.6	17	100	0	88	9	22	0	68	1.18
34817--34889	20	3.7	20	92	1	121	31	19	12	36	1.88
34808--34889	40	2.1	39	88	2	119	32	20	10	35	1.88
35785--35825	21	2.0	21	95	0	73	24	26	24	24	2.00
36673--36864	32	6.1	31	73	10	113	34	20	14	30	1.92
36698--36862	32	5.2	33	77	10	139	34	18	13	33	1.90
36674--36862	64	3.0	64	76	7	172	34	20	14	31	1.92
39925--40232	45	6.8	45	79	2	303	29	20	9	40	1.84
39925--40232	91	3.4	89	77	7	298	29	20	9	40	1.84
39921--40234	136	2.3	136	90	2	472	29	20	9	40	1.84
40781--40835	22	2.6	22	88	5	78	25	27	16	30	1.96
40826--40864	19	2.1	19	85	0	51	30	23	10	35	1.88
41373--41419	23	2.0	23	95	0	85	29	27	4	38	1.76
47053--47360	45	6.8	45	82	2	339	29	19	10	40	1.84
47073--47360	91	3.2	90	80	5	357	29	20	10	39	1.85
47053--47362	136	2.3	136	90	1	487	29	20	10	40	1.84
47115--47394	136	2.1	136	86	2	384	30	22	10	37	1.87
47933--47988	22	2.7	21	79	15	64	25	30	16	28	1.96
56948--57109	88	1.8	89	91	1	272	38	8	6	46	1.61
57072--57113	20	2.0	20	86	9	57	42	0	7	50	1.30

Tables:   1

The End!