genome.fa.s4374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004374.1 Hibiscus syriacus cultivar Beakdansim tig00009582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90993

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047--1099	23	2.2	24	83	9	65	35	20	18	24	1.95
3617--3683	29	2.3	29	92	0	107	38	23	7	29	1.82
3661--3741	29	2.8	29	96	0	144	43	25	11	19	1.84
10848--10914	29	2.3	29	86	0	89	37	25	7	29	1.83
10958--11010	18	3.2	17	75	25	60	11	20	49	18	1.78
10951--11010	31	2.0	30	93	3	102	13	21	46	18	1.83
10961--10997	13	2.8	13	95	0	65	10	21	48	18	1.78
11007--11057	10	5.5	10	73	17	56	21	27	33	17	1.96
10999--11058	18	3.3	18	100	0	120	23	26	33	16	1.96
10950--11058	36	3.2	36	84	8	131	18	24	39	17	1.92
12411--12476	16	3.8	16	71	21	60	27	19	22	30	1.98
12411--12498	38	2.3	38	92	0	140	25	22	22	29	1.99
12450--12504	22	2.5	22	81	0	65	23	21	21	32	1.98
12633--12668	13	2.8	13	100	0	72	30	0	16	52	1.44
13260--13345	31	2.8	31	92	0	127	22	27	23	26	1.99
13957--13995	20	1.9	21	89	5	62	35	17	17	28	1.94
13984--14058	15	5.0	15	98	0	141	28	20	12	40	1.87
28685--28712	13	2.2	13	100	0	56	17	21	32	28	1.96
29380--29443	13	4.9	13	72	12	60	20	14	50	15	1.78
29361--29465	52	2.0	52	84	0	138	21	9	46	21	1.80
29361--29448	26	3.4	26	90	0	131	21	10	47	20	1.79
29612--29646	3	11.7	3	87	0	52	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29612--29645	12	2.8	12	95	0	59	61	0	2	35	1.11
29836--30340	138	3.7	139	83	3	531	31	16	21	31	1.95
30659--30712	28	1.9	28	81	7	65	22	20	24	33	1.97
32502--32529	13	2.2	13	100	0	56	17	21	32	28	1.96
33198--33261	13	4.9	13	72	12	60	20	14	50	15	1.78
33179--33283	52	2.0	52	84	0	138	21	9	46	21	1.80
33179--33266	26	3.4	26	90	0	131	21	10	47	20	1.79
33430--33464	3	11.7	3	87	0	52	62	0	2	34	1.10
33430--33463	12	2.8	12	95	0	59	61	0	2	35	1.11
33687--34159	138	3.4	138	83	4	544	32	15	20	30	1.94
34480--34533	28	1.9	28	85	7	74	22	20	25	31	1.98
34714--34754	19	2.2	19	86	4	57	53	2	0	43	1.13
35767--35796	13	2.3	13	94	0	51	16	23	30	30	1.96
35812--35845	17	2.1	16	88	5	50	8	26	0	64	1.22
36430--36512	26	3.2	26	84	0	112	22	10	46	19	1.80
36905--37409	138	3.7	136	82	4	514	31	17	20	30	1.96
37729--37784	29	1.9	29	85	7	78	23	19	26	30	1.98
37756--37835	42	1.9	42	84	5	108	33	20	20	26	1.96
39237--39326	44	2.0	45	84	2	119	31	21	12	35	1.90
40410--40486	14	5.7	13	75	20	52	5	20	0	74	1.01
40440--40485	22	2.1	21	88	4	65	4	17	0	78	0.91
40410--40476	27	2.5	27	79	18	77	4	20	0	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40410--40487	6	12.7	6	72	18	54	5	20	0	74	1.01
40449--40489	14	2.7	15	85	11	57	2	21	0	75	0.92
45195--45304	31	3.4	31	68	18	89	34	19	21	24	1.96
45194--45318	66	1.9	66	89	0	196	33	20	21	24	1.97
45214--45318	31	3.3	31	68	15	77	34	22	20	22	1.97
49326--49408	2	42.0	2	97	2	159	49	0	0	50	1.00
49487--49525	18	2.2	16	83	16	51	61	0	0	38	0.96
49779--49853	3	24.3	3	83	5	87	38	0	1	60	1.06
52005--52060	24	2.4	23	77	11	60	26	8	1	62	1.35
52023--52057	18	1.9	18	88	11	54	31	8	2	57	1.44
56408--56443	2	18.0	2	100	0	72	50	0	0	50	1.00
58748--59027	93	3.0	91	91	3	427	28	13	20	37	1.91
58934--59245	113	2.7	113	92	2	500	31	15	21	32	1.94
61313--61471	54	2.9	54	91	0	246	35	15	25	23	1.94
62513--63124	76	8.0	76	94	0	1044	22	20	21	35	1.96
63281--63358	3	25.3	3	83	5	93	35	0	1	62	1.03
67120--67820	45	15.6	45	94	0	1181	33	19	23	23	1.97
68878--68979	54	1.9	52	90	4	159	29	25	15	29	1.96
69945--70083	75	1.9	75	86	3	199	30	22	15	32	1.94
73095--73340	122	2.0	122	87	1	350	33	20	15	30	1.94
78400--78438	18	2.2	16	83	16	51	61	0	0	38	0.96
83771--83817	21	2.2	22	81	11	62	42	31	6	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83783--83823	21	2.0	21	95	0	73	39	34	7	19	1.80
87081--87145	28	2.3	28	97	0	121	29	12	6	52	1.63
87159--87189	15	2.1	15	93	0	53	54	0	0	45	0.99

Tables:   1

The End!