genome.fa.s4375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004375.1 Hibiscus syriacus cultivar Beakdansim tig00009584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89277

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3732--3756	12	2.1	12	100	0	50	56	0	28	16	1.41
5775--5813	18	2.2	18	86	4	53	28	0	15	56	1.40
9131--9168	16	2.3	16	90	4	58	26	15	26	31	1.96
19130--19216	7	12.0	7	83	10	54	78	1	11	9	1.03
19143--19188	7	6.3	7	95	5	74	73	0	13	13	1.09
19130--19224	16	5.9	16	83	12	97	77	1	11	9	1.03
19146--19225	7	11.1	7	84	11	58	77	0	13	8	0.99
20511--22262	54	32.5	54	86	4	1515	33	17	26	23	1.96
21009--21094	25	3.3	25	66	28	70	34	16	30	18	1.93
21426--21586	80	2.0	80	91	0	259	34	18	24	22	1.96
21480--21532	26	2.0	26	96	0	97	35	18	22	22	1.95
21388--21640	134	1.9	134	90	1	409	34	16	26	22	1.95
21210--22096	296	3.0	295	92	2	1433	33	16	26	23	1.96
21318--21694	188	2.0	188	91	1	603	33	17	25	23	1.96
21264--21988	242	3.0	241	86	6	965	33	16	26	23	1.96
21777--21828	26	2.0	26	96	0	95	36	17	23	23	1.95
21722--21882	80	2.0	80	97	0	304	34	16	26	22	1.95
21668--21936	134	2.0	134	96	0	493	33	17	27	21	1.96
21617--21988	188	2.0	186	94	1	654	33	17	26	22	1.96
21802--22214	160	2.6	161	92	0	666	33	16	26	23	1.96
22222--22395	55	3.2	55	87	0	240	31	13	26	29	1.94
22596--22634	18	2.2	18	86	4	53	28	0	15	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25947--25985	19	2.1	19	85	0	51	38	5	15	41	1.69
28453--30387	391	5.0	390	84	2	2384	41	12	17	28	1.87
28436--30387	779	2.5	779	83	3	2485	41	12	17	28	1.87
30763--30837	5	15.6	5	74	13	52	74	0	4	21	0.98
36960--36993	13	2.6	13	90	0	50	76	2	14	5	1.09
44691--44715	13	1.9	13	100	0	50	56	0	24	20	1.43
46137--46170	14	2.5	13	90	4	50	61	14	0	23	1.33
58136--58169	13	2.8	12	82	8	50	58	0	23	17	1.38
59563--59607	23	2.0	23	86	4	65	46	0	2	51	1.13
60858--60923	29	2.3	29	100	0	132	33	6	15	45	1.70
61701--61740	18	2.2	18	90	0	62	42	12	2	42	1.56
61734--61818	30	2.8	29	86	10	109	40	7	1	51	1.37
61745--61818	30	2.4	30	88	2	112	41	5	0	52	1.24
61884--62020	28	4.7	29	73	13	95	53	0	7	38	1.34
63616--63795	51	3.6	50	74	10	159	29	10	11	49	1.71
64273--64318	24	2.0	24	91	4	76	43	4	15	36	1.66
64281--64331	24	2.1	24	88	3	75	49	3	13	33	1.61
67151--67207	15	4.0	14	82	17	73	54	0	0	45	0.99
67129--67301	28	6.1	28	74	18	119	49	1	2	46	1.24
67129--67256	28	4.6	27	78	15	120	49	0	1	48	1.16
67239--67425	31	5.8	31	75	17	168	49	2	5	42	1.39
67303--67364	14	4.4	14	74	11	54	43	1	8	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67252--67456	64	3.2	65	78	13	217	48	3	5	42	1.42
67330--67417	15	5.6	15	69	24	65	50	2	3	44	1.31
67305--67377	20	3.5	20	70	21	60	46	2	6	43	1.44
67166--67417	64	3.9	64	76	15	241	48	1	4	44	1.33
67432--67484	21	2.5	21	81	0	70	47	3	7	41	1.50
67537--67588	24	2.2	24	82	6	61	44	5	9	40	1.61
67674--67906	18	13.1	18	67	16	119	41	7	6	44	1.59
67648--67802	51	2.9	51	71	13	125	42	6	5	45	1.54
67685--67930	33	7.5	33	77	11	247	42	7	6	43	1.59
67974--68087	7	16.6	7	74	13	60	46	3	7	42	1.48
67952--68020	34	2.0	36	85	5	97	43	2	7	46	1.46
67979--68105	20	6.0	19	71	18	74	45	2	8	43	1.47
68003--68098	27	3.7	27	79	6	99	47	3	8	40	1.49
68888--69305	236	1.8	225	92	6	712	22	16	17	43	1.88
72031--72099	13	5.2	13	80	5	75	20	24	15	39	1.92
72031--72099	27	2.6	26	79	4	75	20	24	15	39	1.92
74219--74254	18	2.0	18	88	0	54	61	0	13	25	1.33
77404--77437	17	2.0	17	88	0	50	52	5	20	20	1.67
78538--78588	20	2.6	20	84	9	61	27	17	29	25	1.98
85547--85629	23	3.7	23	76	6	82	22	27	20	28	1.99
86088--86121	13	2.6	13	95	0	59	35	14	5	44	1.70
86698--86727	15	2.0	15	93	0	51	40	0	23	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87319--87356	15	2.5	15	100	0	76	7	57	5	28	1.49
88315--88370	21	2.7	21	94	0	94	21	25	30	23	1.99

Tables:   1

The End!